Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40820 682 / 0 unknown protein AT3G56480 660 / 0 myosin heavy chain-related (.1) AT2G26770 600 / 0 SCAB1 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G033100 [exp] 920 / 0 AT2G40820 687 / 0.0 unknown protein Potri.009G066800 [exp] 616 / 0 AT2G26770 785 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2) Potri.001G272300 [exp] 613 / 0 AT2G26770 773 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038998 [exp] 727 / 0 AT2G40820 611 / 0.0 unknown protein Lus10027293 [exp] 714 / 0 AT2G40820 614 / 0.0 unknown protein Lus10036073 [exp] 596 / 0 AT2G26770 783 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2) Lus10026809 [exp] 565 / 0 AT2G26770 745 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF16709 [poplar] [flax] SCAB-Ig Ig domain of plant-specific actin-binding protein CL0159 [poplar] [flax] PF16711 [poplar] [flax] SCAB-ABD Actin-binding domain of plant-specific actin-binding protein CL0159 [poplar] [flax] PF16712 [poplar] [flax] SCAB_CC Coiled-coil regions of plant-specific actin-binding protein
Representative CDS sequence Show only first row Show all	>Potri.006G035300.4 pacid=42769238 polypeptide=Potri.006G035300.4.p locus=Potri.006G035300 ID=Potri.006G035300.4.v4.1 annot-version=v4.1 ATGACGAAGATAAGTCCAGAAATTGAGGAAAATATGCAGGGAGAAGTAATTTTTCCTGTTTCGGCTGATGTGAGCTTTGCTTCTGATGGGTTTCCAAAAT ATAAATTAGGACCTGATAATCAGATTTTGGAAGAGCCAAAGGAGGACAACAAGGGTCCATCTTTAAAGGAAGTTGTTGAACAGGAAACTATGCAGCTGTC AGATCAGCACAAGCGACTCTCAGTTCGTGACCTTGCCTGTAAATTTGACAAGAACTTGACTGCTGCTGCTAAGTTGGCTGAAGAGGCAAAGCTTAGAGAG GTGGCTTCTTTGGAAGGACATGTTCTTTTAAAGAAGCTTAGAGATGCCCTGGAATCATTAAGAGGTCGTATGGCCGGGCGAAACAAGGAGGATGTGGAGA AAGCCATATCTATGGTGGAGGCATTAGCGGTTAAACTGACTCAAAACGAAGGAGAATTAATTCAAGAAAAATTTGAAGTGAAAAAGCTGGCCAACTTTCT TAAACAGGCTTCTGAAGATGCTAAAAAGTTAGTGAACCAAGAAAAATCTTTTGCTTGTGCTGAAATTGAGAGTGCCAGAGCAGTTGTGCAAAGGATTGGA GAAGCCCTAGATGAAGAAGAAAGGGATGCTCAAAATTCGAAAAACCAGGCTGCTGATGTGGAGGAACTAGTTGAGGAGGTTCAAGAGGCTAGAAGAATAA AATTATTGCATCAGCCAAGCAAGGTTATGGACATGGAGCATGAACTTCGTGCACTACGAAATCAAATTCGGGAGAAGTCTATAGTTTCAGTTAAACTTCA AAAAGAGCTGGCAAAGAGCAAGAGAGCTGAGCAGAATAAATCTGCTCCATATGTCCTAGATGGTTCTGAAACTCTAGGTTCATCTCTACAACTCAAGCCT CGTTCGGATGGTTCTCCACCCCTTTCGAAGTGTTCAGTTCAGTGGTACCGCGTATCATCTGAAGGCAGCCAACATGAAGTTATTTCAGGTGCCGATAAAA CATTTTATGCTCCGGAACCCTTTGATGTTGGCCGAGTATTGCAAGTGGACATTGTTTCAAATGGCCAGAAAGTCAGTGTAACAACTTCTGGTCCCATTGA ACCTGCTGCAGGATTGGCAAGCCATGTAGAGAATCTCTTGAGAAAATCTAGCTTCGAATTTAGCGTGGTTATTTCCCAGATGAATGGGCAAGATCATGCA TCACATTCTGTCCATGTGTTTAATGTTGGGAAAATGAGGATAAAGCTTTGCAGAGGGTGGATTACAAAGGCTAGAGAAATTTATTCAATGTCAATGCTGT TATGTGGAGTTAGAACCAACAGCAACACTGCTGCAAAGTCATTGTTTTGGCAACCAAGGAAGGGCCTTTCATTCGTATTAACATTCAACTCAGAGCGAGA TAGGAATGCAGCGATAATGCTCGCCAGGAAATACGCCTATGATTGCAATGGGGTCATACTTGCTGGACCAGAAGATCAAGCATAG
AA sequence Show only first row Show all	>Potri.006G035300.4 pacid=42769238 polypeptide=Potri.006G035300.4.p locus=Potri.006G035300 ID=Potri.006G035300.4.v4.1 annot-version=v4.1 MTKISPEIEENMQGEVIFPVSADVSFASDGFPKYKLGPDNQILEEPKEDNKGPSLKEVVEQETMQLSDQHKRLSVRDLACKFDKNLTAAAKLAEEAKLRE VASLEGHVLLKKLRDALESLRGRMAGRNKEDVEKAISMVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRIG EALDEEERDAQNSKNQAADVEELVEEVQEARRIKLLHQPSKVMDMEHELRALRNQIREKSIVSVKLQKELAKSKRAEQNKSAPYVLDGSETLGSSLQLKP RSDGSPPLSKCSVQWYRVSSEGSQHEVISGADKTFYAPEPFDVGRVLQVDIVSNGQKVSVTTSGPIEPAAGLASHVENLLRKSSFEFSVVISQMNGQDHA SHSVHVFNVGKMRIKLCRGWITKAREIYSMSMLLCGVRTNSNTAAKSLFWQPRKGLSFVLTFNSERDRNAAIMLARKYAYDCNGVILAGPEDQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40820			unknown protein		Potri.006G035300 [exp]	0	1
AT3G54030			Protein kinase protein with te...		Potri.006G093900 [exp]	1.73	0.9127
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Potri.009G133100 [exp]	2.00	0.9115	Pt-ADF5.1
AT2G40980			Protein kinase superfamily pro...		Potri.004G137600 [exp]	3.87	0.8931
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	6.70	0.9091
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	6.92	0.9012
AT1G38131			O-fucosyltransferase family pr...		Potri.002G087300 [exp]	7.34	0.8680
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.009G132100 [exp]	8.12	0.8892	PtrAUX6,Pt-LAX5.1
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.006G076200 [exp]	10.24	0.8693	SLP3.1
AT5G10150			Domain of unknown function (DU...		Potri.005G078300 [exp]	10.39	0.8777
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Potri.017G083000 [exp]	12.68	0.8881	GASA4.2

Compare expression of checked genes

Potri.006G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.