Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHR931
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05130 1117 / 0 DNA/RNA helicase protein (.1) AT5G22750 366 / 1e-111 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 365 / 3e-109 Helicase protein with RING/U-box domain (.1) AT1G11100 320 / 2e-93 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G61140 284 / 3e-81 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G50410 277 / 2e-79 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 254 / 5e-71 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G16600 217 / 2e-60 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G05120 219 / 8e-60 Helicase protein with RING/U-box domain (.1) AT1G02670 209 / 3e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G033800 [exp] 840 / 0 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 835 / 0 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 834 / 0 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 808 / 0 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.004G189400 [exp] 343 / 6e-103 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 328 / 3e-98 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.007G000700 [exp] 305 / 4e-89 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.011G046400 [exp] 221 / 2e-59 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.014G154600 [exp] 218 / 3e-59 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039001 [exp] 1081 / 0 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10027296 [exp] 499 / 4e-170 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10043365 [exp] 343 / 2e-102 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041008 [exp] 328 / 5e-98 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041156 [exp] 318 / 3e-93 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10011211 [exp] 317 / 2e-92 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10013452 [exp] 315 / 2e-90 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10030044 [exp] 217 / 2e-58 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10002974 [exp] 158 / 3e-39 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10018465 [exp] 155 / 2e-38 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF08797 [poplar] [flax] HIRAN HIRAN domain
Representative CDS sequence Show only first row Show all	>Potri.006G035700.1 pacid=42769018 polypeptide=Potri.006G035700.1.p locus=Potri.006G035700 ID=Potri.006G035700.1.v4.1 annot-version=v4.1 ATGGAAGAATTTCAAGAGGATCGTGAAGACCCAGTGAGCCTTTACATGTCTCTTGATAATTGGCAGGATTGTTCTTATTTACAAGAAACCCCAAATGAGT CATTCATGGTTGGTTTTGTTATAGCCAATATAGTGGGTTTACAGTACTACTCAGGCACAATTACTGGCCGTGAATTGGTTGGTCTTGTGAGGGAACCACT TAACCCTTTTGATCAGAATGCTTTAAAGGTACTGAACACTAGGTGTCTTCAAGTGGGTCACATTGAAAGGTCAGTTGCTGCTGTTTTATCTCCTTTAATT GATTCTAATATGATTAATGTTGAAGGTATAGTGCCTAATTCTAGGAGTGGTGGTAATAAGTATAAAATTCCCTGTCAAGTTCATGTCTTTGCTAGGGTAG AGGATTTTGAGAGTGTTAAAACTGCGATTTCGCGAGGTGGCTTGGTTTTACTTTCTCAAATGGAAGTAGGTTTTGGGTTATCTGAGGCTATGGTGGTTAA AGAGAAGAATAAGAAAAGCGGGCTAAAGAGTTTGGATGAGATATTTAAATTGGTTGATGAGAACGTGAATAAGAAAGGGAAATTGGGGGCTTTAGAGCCT CCAAAGGAAGTGATAAAGTCTCAACTTTTTGAGCATCAAAAAGAAGGGTTATGGTGGTTGGTTAATAGAGAGAATTCTGGTGAACTACCTCCTTTTTGGG AGGAGAAAGATGGGGAGTTTGTGAATGTTTTGACGAATTATCATACTAATAGGAGACCGGAGCCTCTGCGAGGTGGGATTTTTGCTGATGATATGGGGTT GGGCAAGACTCTAGCTTTACTCTCTTTGATTGCTTTTGATAAATGTGGTGGTGGTACTGGTGTTGTTGGAGGCAATAAAGACAATGTTGCTGAAGAAATA GGTGGGGATGATGAGGATGTATCTGTTTCTGGTAGTAAGAAGGGTAAGAGGGGTAGAGCGAGTAAAAAGGTCATTGGAGGACGGAAAAAGCGTAAAGTTG AGGATACCCTTTCAGATGGAAATGTGAAGGGAAAGTCTGTCCTCATGGCTGATAAGTCTTCTGGTGTTCCGTGTGCTAAGACTACATTAATTGTGTGCCC TCCTGCTGTATTTTCAACATGGATAACTCAGCTAGAGGAGCATACTCAGCGTGGGTCATTGGGTGTATATATGTATTATGGGGAAAGGACTAGAGAAGTT GAGGAGCTTAAGAAGCATGATATAGTATTGACAACATATTCTACTTTGGCTGCCGAGGACCCATGGGAAGACTCCCCTGTGAAGAAGATTGACTGGTGCC GAGTCATTTTGGATGAGGCGCATGTGATTAAGAATGCAAATTCTCAGCAAAGTCGAGCAGTTACCAAATTGAATGCTAAGCGGAGATGGGTTGTTACAGG AACGCCTATCCAGAATGGATCACTTGATTTGTTTTCTCTGATGGCCTTTTTGAGGTTTGAGCCATTCTCCATCAAGAGCTACTGGCAAAGCCTATTACAG AGGCCACTTGCTCAGGGTAACAAAAAAGGGCTCTCACGACTGCAGGTTTTAATGGCAACCATTTCTTTACGGAGAACAAAAGATAAGGGTGTAGTTGGAT TGCCATCAAAAACTGTAGAGACTCATTACATTGAACTTTCTGGTGAAGAACGTGAACTGTATGATCAGATGGAAGCAGAAGCCAAGGGTGTTGTCCAAAA TTTTATCAACACCAACAATCTAATGCGCAACTTTTCGACTGTACTTTGTATAATTTTACGACTTCGCCAGATATGTAATGATTTGGCATTGTGTCCTTCT GATCTGAGGTCACTCCTCCCCTCTAACAGTATTGAAGATGTATCCAATAACCCGGAATTGCTTATGAAGATGGTCACGGTGCTACAAGATGGTGAAGATT TTGACTGTCCGATATGCATTTGTCCGCCAACTGAGACTGTAATAACACGCTGCGCTCACATATTTTGCCGACCATGCATTTTGAAAACCCTGCAGCGCGC CAAACAATGCTGTCCACTTTGTCGCCGTCCTCTATCCGTGTCTGACCTGTTCTCAGCCCCTCCTGAATCTTCTGGTTCTGACAACGCAAACACATCTTCA AGAACAACTACGTCTTCTAAAGTCTCAGCTCTCATAAAACTCTTGATAGCATCAAGGGTTGAAAACCCTGCAAGAAAGTCGGTAGTTTTTTCACAATTCC AGAAGATGTTGGTATTACTTGAGGAGCCACTAAAAGAAGCTGGTTTCAAGATCTTGCGGTTAGATGGGTCAATGAATGCAAAAAAGAGAGCTCAAGTTAT CAAGCAATTTGGAGTGCCAGGACCAGATGGACCCACAGTTCTGCTTGCAAGTCTAAAGGCTTCAGGAGCTGGTATAAACCTTGCAGTTGCTTCCAGAGTC TACTTGTTGGAGCCATGGTGGAATCCAGCAGTTGAGGAACAGGCTATGGACCGTGTCCACCGAATTGGACAGGAGGAGGATGTAACAGTTGTGCGGCTGA TCGCTCAAAGCAGCATTGAAGAGAGGATATTAGAGATGCAGGAAAGGAAGAAGAAACTGGCAAAAGAAGCTTTTGGAAGGCGAGGAACAAAGACCCAAAG GGAGGTTGGCATAGACGATCTCCGTGCACTCATGTCCTTGTGA
AA sequence Show only first row Show all	>Potri.006G035700.1 pacid=42769018 polypeptide=Potri.006G035700.1.p locus=Potri.006G035700 ID=Potri.006G035700.1.v4.1 annot-version=v4.1 MEEFQEDREDPVSLYMSLDNWQDCSYLQETPNESFMVGFVIANIVGLQYYSGTITGRELVGLVREPLNPFDQNALKVLNTRCLQVGHIERSVAAVLSPLI DSNMINVEGIVPNSRSGGNKYKIPCQVHVFARVEDFESVKTAISRGGLVLLSQMEVGFGLSEAMVVKEKNKKSGLKSLDEIFKLVDENVNKKGKLGALEP PKEVIKSQLFEHQKEGLWWLVNRENSGELPPFWEEKDGEFVNVLTNYHTNRRPEPLRGGIFADDMGLGKTLALLSLIAFDKCGGGTGVVGGNKDNVAEEI GGDDEDVSVSGSKKGKRGRASKKVIGGRKKRKVEDTLSDGNVKGKSVLMADKSSGVPCAKTTLIVCPPAVFSTWITQLEEHTQRGSLGVYMYYGERTREV EELKKHDIVLTTYSTLAAEDPWEDSPVKKIDWCRVILDEAHVIKNANSQQSRAVTKLNAKRRWVVTGTPIQNGSLDLFSLMAFLRFEPFSIKSYWQSLLQ RPLAQGNKKGLSRLQVLMATISLRRTKDKGVVGLPSKTVETHYIELSGEERELYDQMEAEAKGVVQNFINTNNLMRNFSTVLCIILRLRQICNDLALCPS DLRSLLPSNSIEDVSNNPELLMKMVTVLQDGEDFDCPICICPPTETVITRCAHIFCRPCILKTLQRAKQCCPLCRRPLSVSDLFSAPPESSGSDNANTSS RTTTSSKVSALIKLLIASRVENPARKSVVFSQFQKMLVLLEEPLKEAGFKILRLDGSMNAKKRAQVIKQFGVPGPDGPTVLLASLKASGAGINLAVASRV YLLEPWWNPAVEEQAMDRVHRIGQEEDVTVVRLIAQSSIEERILEMQERKKKLAKEAFGRRGTKTQREVGIDDLRALMSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05130			DNA/RNA helicase protein (.1)		Potri.006G035700 [exp]	0	1	CHR931
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.018G020200 [exp]	6.85	0.8061
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	11.04	0.7812
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	12.24	0.7568
AT3G50880			DNA glycosylase superfamily pr...		Potri.007G024200 [exp]	15.00	0.7295
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.001G298700 [exp]	16.97	0.7225
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	23.49	0.7660
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.009G034900 [exp]	28.12	0.7470
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.002G028300 [exp]	30.26	0.7577
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123500 [exp]	32.00	0.7123
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Potri.008G044600 [exp]	32.55	0.7319

Compare expression of checked genes

Potri.006G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.