Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) AT3G30280 211 / 1e-63 HXXXD-type acyl-transferase family protein (.1) AT1G24420 210 / 4e-63 HXXXD-type acyl-transferase family protein (.1) AT4G15390 197 / 6e-58 HXXXD-type acyl-transferase family protein (.1) AT5G23970 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1) AT5G47950 179 / 1e-51 HXXXD-type acyl-transferase family protein (.1) AT1G24430 177 / 1e-50 HXXXD-type acyl-transferase family protein (.1) AT5G47980 165 / 4e-46 HXXXD-type acyl-transferase family protein (.1) AT4G15400 142 / 1e-37 HXXXD-type acyl-transferase family protein (.1) AT5G41040 103 / 5e-24 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127000 [exp] 422 / 1e-145 AT3G26040 241 / 6e-75 HXXXD-type acyl-transferase family protein (.1) Potri.015G126600 [exp] 420 / 6e-145 AT3G26040 264 / 5e-84 HXXXD-type acyl-transferase family protein (.1) Potri.019G001400 [exp] 405 / 7e-139 AT3G26040 223 / 6e-68 HXXXD-type acyl-transferase family protein (.1) Potri.019G001200 [exp] 395 / 7e-135 AT3G26040 236 / 6e-73 HXXXD-type acyl-transferase family protein (.1) Potri.017G029300 [exp] 339 / 4e-113 AT1G24430 252 / 3e-79 HXXXD-type acyl-transferase family protein (.1) Potri.001G310000 [exp] 339 / 6e-113 AT3G26040 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) Potri.006G034066 [exp] 328 / 1e-111 AT3G26040 163 / 2e-47 HXXXD-type acyl-transferase family protein (.1) Potri.004G017600 [exp] 328 / 9e-109 AT3G26040 257 / 4e-81 HXXXD-type acyl-transferase family protein (.1) Potri.005G028200 [exp] 306 / 2e-100 AT3G26040 232 / 1e-71 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030751 [exp] 222 / 2e-67 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 213 / 6e-64 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 199 / 7e-59 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 196 / 1e-57 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 191 / 9e-56 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 186 / 1e-53 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 178 / 8e-51 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 174 / 7e-48 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 171 / 7e-48 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 162 / 1e-44 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.006G036100.1 pacid=42770610 polypeptide=Potri.006G036100.1.p locus=Potri.006G036100 ID=Potri.006G036100.1.v4.1 annot-version=v4.1 ATGAAGGTTCAAATCTTATCTAGAAAGTTGATAGCTCCATCATCTCCAACTCCACCCAACCTTAAGAACTTGAAGATTTCATGTTTTGACCAGCTTGCTC CTCCCACGTACGTGCCCTGCGTTTTCTACTACCCAGCCAATGGTGAAGACCATGGTGGAAACAATGTCGAGCGGAGTAAGAAAATCGAAAAATCACTAGC TGAAACCTTAGCCCTCTTTTACCCACTAGGGGGGAGATACACCGAAGAAAATTTGTCAATTGAGTGTAGTGATGAGGGAGCAGAATATTTGGAAGCTCGA GTTAGTGGTTCCCTATCTCAACTTCTCGAAAGAGAAGAGTTTAAGACTGAAATGTGGTCGCGTTTGGTGCCACGAGTACTCCAACCAGAAAACAGCCCTC TTGTAACCATTCAAATCAATATGTTTGAATGTGGAGGACTAGCTATTGGTACATGTGTGGCACACAGGATAGCTGATGCATACACAGTAGGTACCTTCAT CAACACTTGGGCCACTGCTTGCCGAATTGGGATCGAAAAGGTACATTGTCGTCCGAGCTTCCCTTTCGGTTCTCTTTTTCCACCGAAGAACATACCCGCT ATCACTTCGGTGGACGATGTGATAAGTGTTAGAGCTGTTAAAAAGGTTGTCAGGAAATCTTTCGTGTTTAAAGGTGAAACTATATCAAGATTGAAAGAAA TTGCTGCAGCTTTTGATTCAAACCAGCTGCTGAAATACCAACCGACCCGAGTGGAGGTTGTGACAGGACTTATATGGATGGTTCTCATAAGGGTAGCTCG AGCTATCCACGGCCACCTGAGGCCTTCTGTCTTTGGACTTACAGTTAACATGCGAGGGAAGACAACTTTAACTATGCCCGAGTATGCTTGTGGAAACTTC ATAAACTTGGTGATTGCGCAATTTGTGCCAGATGATGAGAGCAAGATTGAGCTTCATGACTGTGTAAATCGGGTGCACGATGCGATAAGAAGCGCTGTAG AGGATTGTGCGAAAGCTCCAAGCGGGGATGAGTTATTTTCTCTCATGATCAAGAAGATGAGGGAGGGGGATGAAGCATGGAGAAAAAGCGAGATAGATGC CTATATAGTAAACTCTTGGTGTCGTTTGCCATGGTATGAAACAGATTTTGGATGGGGAAAGCCCTCTTGGGTGCATGGCGTGGATGCCGCTACAAGTCCT GGTACTGTTACGCTCATGGACACTGAAGATGGTGGTGGAATTGAGGCATTTTTAGGTTTGGATGAGAGTAGCACACTTCTTTTTCAGCAAAATCTGGACG TTGCATTAACTGGCAACTAG
AA sequence Show only first row Show all	>Potri.006G036100.1 pacid=42770610 polypeptide=Potri.006G036100.1.p locus=Potri.006G036100 ID=Potri.006G036100.1.v4.1 annot-version=v4.1 MKVQILSRKLIAPSSPTPPNLKNLKISCFDQLAPPTYVPCVFYYPANGEDHGGNNVERSKKIEKSLAETLALFYPLGGRYTEENLSIECSDEGAEYLEAR VSGSLSQLLEREEFKTEMWSRLVPRVLQPENSPLVTIQINMFECGGLAIGTCVAHRIADAYTVGTFINTWATACRIGIEKVHCRPSFPFGSLFPPKNIPA ITSVDDVISVRAVKKVVRKSFVFKGETISRLKEIAAAFDSNQLLKYQPTRVEVVTGLIWMVLIRVARAIHGHLRPSVFGLTVNMRGKTTLTMPEYACGNF INLVIAQFVPDDESKIELHDCVNRVHDAIRSAVEDCAKAPSGDELFSLMIKKMREGDEAWRKSEIDAYIVNSWCRLPWYETDFGWGKPSWVHGVDAATSP GTVTLMDTEDGGGIEAFLGLDESSTLLFQQNLDVALTGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G036100 [exp]	0	1
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	1.00	0.9688
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.019G091300 [exp]	4.58	0.9592
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.011G083100 [exp]	4.89	0.9591	PLCYC4.2
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111800 [exp]	5.19	0.9631
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	7.41	0.9595
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	8.60	0.9638
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.005G250200 [exp]	10.09	0.9593
AT1G62760			Plant invertase/pectin methyle...		Potri.001G119300 [exp]	11.61	0.9527
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	12.00	0.9600
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	13.78	0.9505

Compare expression of checked genes

Potri.006G036100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.