Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 619 / 0 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 605 / 0 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 426 / 4e-146 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 417 / 1e-142 SCPL41 serine carboxypeptidase-like 41 (.1) AT5G42240 412 / 7e-141 SCPL42 serine carboxypeptidase-like 42 (.1) AT2G12480 389 / 3e-132 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT4G30610 353 / 5e-118 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G35770 344 / 2e-114 SCPL28 serine carboxypeptidase-like 28 (.1) AT3G63470 342 / 6e-113 SCPL40 serine carboxypeptidase-like 40 (.1) AT3G02110 340 / 1e-112 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164000 [exp] 634 / 0 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 629 / 0 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 621 / 0 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 613 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 605 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 597 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 595 / 0 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.015G104700 [exp] 589 / 0 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 417 / 1e-142 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042287 [exp] 689 / 0 AT1G28110 598 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10036016 [exp] 593 / 0 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10016722 [exp] 591 / 0 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 576 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 574 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 574 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10021856 [exp] 568 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 567 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 560 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 558 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.006G036500.1 pacid=42770497 polypeptide=Potri.006G036500.1.p locus=Potri.006G036500 ID=Potri.006G036500.1.v4.1 annot-version=v4.1 ATGCAGCAGAAAGAGCCATGGATTGTCATTGCAGCAATTTGTGCAACTCTAATCTTTTTAACAACAGGGTCAATCTCAGAAGCTGGAAAAATTGTAGCTT TGCCAGGCCAGCCAACGGTCAGTTTTCAACAGTATGCGGGATACATAACCATTGACGAGCAGCAGAAGAGAGCCCTTTTCTACTACTTTGCTGAAGCAGA AATAGACCCAGCGACAAAGCCTCTTGTTCTATGGTTAAATGGAGGGCCTGGTTGTTCATCAATCGGAGCTGGAGCTTTTTGTGAGCATGGACCTTTCAAA CCAAGTGGAGAGATATTGCTCAAAAATGATTATAGCTGGAATAAAGAAGCAAATATGTTATACCTGGAATCACCTGCAGGAGTTGGCTTCTCCTACTCTG CTAATGATTCTTTCTACACCTATGTGACCGATGGGATTACAGCACAAGACAATCTAGTATTTCTTGAGAGATGGTTCGATGAATTCCCAGAATACAAAGG AAGAGATTTCTTCATCACAGGAGAGAGCTATGCAGGTCATTATGTTCCACAACTTGCAACACTTATAGTCCAATCCAAAGCAAAATTCAATCTGAAGGGA ATAGCAATAGGAAATCCACTGCTAGAATTCAATACCGATTTTAATTCGCGTGCCGAGTTTTTTTGGTCTCATGGATTGATATCAGATAATACCTATGAGA TTTTCACCACGGTTTGTAACTACTCCCAAATCAGGAGACAATATCAAAGTGGCTCTCTTTCTCTACCTTGCTCTGCAGTAAATAGCCAAGTCTCAAGGGA AGTTAGTAAATATGTTGACGCCTATGATGTTACTCTTGATGTCTGTTTATCATCGATTGAATCTCAATCCCAAGTGTTAAAACAAATGGAATATACAGGG ACAATAGATGTCTGTGTAGAAGATGAAACAATCAAGTACTTGAATAGAAAAGATGTACTGGAAGCTCTTCATGCTCAGCTTGTTGGAGTAGATCAATGGA CGGTATGCAGTGATGTCGTCAAATATGAGATGGAAAATCTAGAAATTTCCACAGTTCCTCTTCTTGCCAAGCTTCTCAAGTCCGGCATCCGGGTTCATGT TTACAGTGGAGATCAAGATTCAGTGATCCCACTCACTGGAACAAGGACAGTAGTGAATGGGTTGGCAAAGGAATTGGGACTAAACACAACTGTTCCTTAC AGAACCTGGTTCCAGGGAAAACAGGTTGCTGGGTGGACACAAGTATATGGTAATATATTATCTTTTGCAACCATCAGAGGAGCATCACATGAAGCTCCAT TTTCACAGCCAGAAAGATCTTTTGTTCTGTTTAATGCATTCTTGGAAGGGAAGCAACTACCACCCCCTACAGTTTACTGA
AA sequence Show only first row Show all	>Potri.006G036500.1 pacid=42770497 polypeptide=Potri.006G036500.1.p locus=Potri.006G036500 ID=Potri.006G036500.1.v4.1 annot-version=v4.1 MQQKEPWIVIAAICATLIFLTTGSISEAGKIVALPGQPTVSFQQYAGYITIDEQQKRALFYYFAEAEIDPATKPLVLWLNGGPGCSSIGAGAFCEHGPFK PSGEILLKNDYSWNKEANMLYLESPAGVGFSYSANDSFYTYVTDGITAQDNLVFLERWFDEFPEYKGRDFFITGESYAGHYVPQLATLIVQSKAKFNLKG IAIGNPLLEFNTDFNSRAEFFWSHGLISDNTYEIFTTVCNYSQIRRQYQSGSLSLPCSAVNSQVSREVSKYVDAYDVTLDVCLSSIESQSQVLKQMEYTG TIDVCVEDETIKYLNRKDVLEALHAQLVGVDQWTVCSDVVKYEMENLEISTVPLLAKLLKSGIRVHVYSGDQDSVIPLTGTRTVVNGLAKELGLNTTVPY RTWFQGKQVAGWTQVYGNILSFATIRGASHEAPFSQPERSFVLFNAFLEGKQLPPPTVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036500 [exp]	0	1
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.014G035800 [exp]	3.87	0.7406	PDE135.1
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Potri.001G160100 [exp]	4.89	0.6846
AT3G29390		RIK	RS2-interacting KH protein (.1...		Potri.017G093600 [exp]	10.09	0.7052
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.008G025800 [exp]	10.48	0.7024
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	11.13	0.7133
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	12.72	0.6927
AT5G14940			Major facilitator superfamily ...		Potri.017G152800 [exp]	15.23	0.7027
AT4G27290			S-locus lectin protein kinase ...		Potri.010G015400 [exp]	20.14	0.6865
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	23.62	0.6804	Pt-UBP27.1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017700 [exp]	33.54	0.6684

Compare expression of checked genes

Potri.006G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.