Plant FIBer expression Database

Potri.006G036601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19485 499 / 8e-167 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G200900
[exp]
1019 / 0 AT1G19485 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018573
[exp]
527 / 2e-175 AT1G19485 487 / 4e-158 Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10039804
[exp]
528 / 3e-175 AT1G19485 483 / 4e-156 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.006G036601.1 pacid=42768839 polypeptide=Potri.006G036601.1.p locus=Potri.006G036601 ID=Potri.006G036601.1.v4.1 annot-version=v4.1
ATGGATTGTGCAAATAAGACGCTGCATAAGAAGAGCCAGCCAATCCACCAACACAGCCCCCGTCAGTCCTTCCACGCACCACCACCAACCTCAACCCCTT
CATACATCGTCTCTGCAACAGAAACTCGCCAAACCATCAAGGGGGCTGTAACCGACGGGACCAGGGGAGAGAGCAGAAGATACCAACGTTTTGAAGAAGT
TTTTTCCTGGAGAAACTCAAGAACATATCAGCTCAAGTTGCTCTTCTTGGGTCCAAATCTACAAGGACTCCTAAGCCAAGGTATATACAATCGCTGCCTC
TCTGAGAATTTAGCTCAGGTTAAGAGGCCAAGAGGACAACCTAGAAAGAACCCAACAAATGATACTCTTGATAATTTGGATAGCAGCAACCAATATGTCC
AAGCTCTCGCTATTGAATACCCACAAGATTCACCTGGACTTCTTGCTATAGAAGGTATTTCTCAAAACATCCTAGATGAGGCCAAACAAAAACGCAAGGT
GAAAGAACAAAAAAATTTCACCAAAAAGCTATCTGATTGTAATTCAAATCTTAGAACTACTGCACAAAGTAGAAGATTGAAAAGTAAGGCAAGGAAGGGA
AGTAATTATGATGGTGTTGCTTGTCCACTGTTATTGACTCATAATGAAGATGATAATGTTTCTTTGGATATCAACTCCACTTCAACTGTAAACTACCAAA
CACATGAGAATTCTGGACTCAACACTGCAATGCTAGCTTATGGTTCTGATAATGTTTCTTTGGATATCAACTCCACTTCTTCCATTCCAAAGGATGCTGA
TTCGGCAAGAGTTGTATTATGCCTTGCTCACAATGAAAAAGTTGCATGGGATCATCGCATGGGCTATCTTGCTGTCTTGCTAGGAAATGGATCTTTGGAA
GTATGGGATTTTCCTCTCCCCCATGCTATGAAATCTGTTTATTCTTCTTCTAATGGAGAAGGCACAGATCCTCGCTTTGTCAAGCTAAAGCCAGTATTCA
GATGTTCAACTCTGAAGTGTGGAGTAGAGTGGTCAACTTCACACCATCATGATTACTTACTTGCTGGATGCCATGATGGAACTGTTGCTTTGTGGAAATT
CTCTGCAAGTGGTGCATCTGATACAAGGCCTTTGCTTTGTTTCAGCGCAGATACAGTTACTATTAGAGCAATCACATGGGTCCCATCTGAAAGTGACCAA
GGGAGTCCAAATCTTATCCTCACTGCCAGACATTGGTGCCTGAAGTTTTGGGACATGCGTGATTCATTCCGACCTTTGTGGGACCTTCATCCAGCGCCAA
AACTCATATATAGCCTGGATTGGCTGCCAGATCCAAGATGTATAATTTTATCCTTAGATGATGGAACAATGAGACTCCTCAGCTTGGCAAAGGCTGCGTA
TGATGCTGCTGTCAATGGACAACCTTCTGTTGGACCAAAACAACTAGGGATGCACGTTTTTAATTGTTCTTCCTTTGCTATCTGGAGCATTCAAGTGTCA
AGGCTTACAGGCATGGTTGCATATTGTAGTGCAGATGGTACTGTTTGCCGCTTCCAGCTCACAACCAAAGTAGTGGAGAAAGATCCATCGAAACATAGGG
CCCCACATTTTGCTTGTGGGTCCTTGAGTGAGGATGAATCAGCTATTGTAGTTGGCACTCCATTACCAGATGGTCCTTTACCTTTGAAGAGGCTAGTTAA
CGATGTTGGGAACAATCCAAAATCCAAGCAGCCCTTGTCTGTGTCAAATAAGGCCGCAAAAATCCCAACTTCAGATGATCAACCGTTAGCTCTGTGCTAT
GGTGATGATCCAGGTATGTATGATGGATCAGATGAAACATTGACAGCTTCAAAAAGCAAAAAGAAACCAAAATCTAAAAGTGGGGGTAAGAAACAGGAAG
GAGAAGATCTGGCATTGACATGTATCGAGCAAGATGACAAACAGAAAGGAAGAGGAAAGGATGGAGCTGGGAATGTAATTGAAAGTATCCCACCAAAAAT
TGTTGCAATGCATAGAAGATGGCTGTGCTCCGGAGGAGCAGCCGGAATCGTACGGTGTCAAGAAATCAAAATGTCTGGTGTTGATATATGCTTGGCTAGG
AAGAGATAG
AA sequence
>Potri.006G036601.1 pacid=42768839 polypeptide=Potri.006G036601.1.p locus=Potri.006G036601 ID=Potri.006G036601.1.v4.1 annot-version=v4.1
MDCANKTLHKKSQPIHQHSPRQSFHAPPPTSTPSYIVSATETRQTIKGAVTDGTRGESRRYQRFEEVFSWRNSRTYQLKLLFLGPNLQGLLSQGIYNRCL
SENLAQVKRPRGQPRKNPTNDTLDNLDSSNQYVQALAIEYPQDSPGLLAIEGISQNILDEAKQKRKVKEQKNFTKKLSDCNSNLRTTAQSRRLKSKARKG
SNYDGVACPLLLTHNEDDNVSLDINSTSTVNYQTHENSGLNTAMLAYGSDNVSLDINSTSSIPKDADSARVVLCLAHNEKVAWDHRMGYLAVLLGNGSLE
VWDFPLPHAMKSVYSSSNGEGTDPRFVKLKPVFRCSTLKCGVEWSTSHHHDYLLAGCHDGTVALWKFSASGASDTRPLLCFSADTVTIRAITWVPSESDQ
GSPNLILTARHWCLKFWDMRDSFRPLWDLHPAPKLIYSLDWLPDPRCIILSLDDGTMRLLSLAKAAYDAAVNGQPSVGPKQLGMHVFNCSSFAIWSIQVS
RLTGMVAYCSADGTVCRFQLTTKVVEKDPSKHRAPHFACGSLSEDESAIVVGTPLPDGPLPLKRLVNDVGNNPKSKQPLSVSNKAAKIPTSDDQPLALCY
GDDPGMYDGSDETLTASKSKKKPKSKSGGKKQEGEDLALTCIEQDDKQKGRGKDGAGNVIESIPPKIVAMHRRWLCSGGAAGIVRCQEIKMSGVDICLAR
KR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19485 Transducin/WD40 repeat-like su... Potri.006G036601
[exp]
0 1
AT1G05350 NAD(P)-binding Rossmann-fold s... Potri.012G097700
[exp]
2.00 0.9088
AT3G17310 DRM3, AtDRM3 domains rearranged methyltrans... Potri.010G152200
[exp]
4.47 0.8683
AT1G28260 Telomerase activating protein ... Potri.004G045300
[exp]
6.24 0.8340
AT4G36980 unknown protein Potri.005G138200
[exp]
6.48 0.8748
AT2G44900 ARABIDILLO-1, A... F-box Armadillo protein 1, ARA... Potri.002G137100
[exp]
9.48 0.8416
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Potri.014G036800
[exp]
10.95 0.8337
Potri.008G119000
[exp]
13.19 0.8142
AT3G21810 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.007G121700
[exp]
13.78 0.8393
AT5G51980 C3HZnF Transducin/WD40 repeat-like su... Potri.014G077800
[exp]
16.00 0.8336
AT5G51410 LUC7 N_terminus domain-contain... Potri.003G109000
[exp]
16.73 0.8128

Potri.006G036601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.