Plant FIBer expression Database

Potri.006G036800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26800 471 / 4e-165 Aldolase superfamily protein (.1.2.3)
AT5G23010 56 / 3e-08 MAM1, IMS3 2-ISOPROPYLMALATE SYNTHASE 3, methylthioalkylmalate synthase 1 (.1)
AT5G23020 52 / 6e-07 IMS2, MAM-L, MAM3 METHYLTHIOALKYMALATE SYNTHASE-LIKE, 2-isopropylmalate synthase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G068600
[exp]
474 / 2e-166 AT2G26800 575 / 0.0 Aldolase superfamily protein (.1.2.3)
Potri.001G274004
[exp]
179 / 2e-55 AT2G26800 186 / 2e-58 Aldolase superfamily protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036056
[exp]
483 / 3e-169 AT2G26800 659 / 0.0 Aldolase superfamily protein (.1.2.3)
Lus10026823
[exp]
462 / 1e-161 AT2G26800 605 / 0.0 Aldolase superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00682 HMGL-like HMGL-like
Representative CDS sequence
>Potri.006G036800.1 pacid=42769410 polypeptide=Potri.006G036800.1.p locus=Potri.006G036800 ID=Potri.006G036800.1.v4.1 annot-version=v4.1
ATGATAACCACAAAGGCTCTCTCCAAGTTTTCTCGGAGTTGCAGTTTCTTACATCATCGTAATTTTGTCCCAATGAAACCCATCTTAGATGGCGCAACAA
CAAATGATATGGCACCCACAAACTCTTTTTTAAAAGGTGTAAATGATACAAGAGAGGCAGTCTCTTGGAGTGGACAAACAAGAAGAATGTCTCAAAGGGG
TTTCTTGAATCATTCACGTTCAATATTGGGTTGGAATTCTATGGAAATTGATAATGTTCATGATGCTTTGCGCTTGCCAAGTCGTCATTTTAGTACTTAT
TACAATGACAAACTCAGAAGGGAATCGACAAATGAGCTTTTTAGCAGCATTCCAGAATATGTGAAGATAGTGGAAGTTGGTCCAAGGGATGGATTGCAAA
ATGAGAAGGATATTGTACCTACTGCTGTTAAGGTTGAGCTGATCAAAATGCTAGCTTCTTCAGGGTTGCCTGTTGTTGAGGCCACGAGTTTTGTTTCCCC
AAAATGGGTACCGCAGCTAGCAGATGCAAAGGATGTAATGGAAGCAATCAGAGATTTTAAAGGTGCTCGATTTCCAGTCTTAACTCCTAATCTAAAAGGC
TTTGAAGCAGCTATTGCAGCTGGAGCCAAGGAAGTGGCTGTCTTTGCCTCTGCTTCGGAGGGTTTCTCAAAATCAAACATCAATTGCAGCATTGAAGATA
GTCTTGTTCGTTATCATGAAGTTGCCCTCTCTGCCAGCAAGCTTTCAATTCCTGTTCGTGGCTATATATCATGTGTTGTGGGGTGTCCTGTAGAAGGCAT
GGTTTCTCCATCTAAAGTTGCATATGTGGCCAAAAAGCTTTGTGACATGGGATGCTATGAAATTTCTCTTGGTGATACAATTGGAGTTGGTACTCCTGGC
ACTGTCATCCCAATGCTCGAAGCTGTTATTGATGTTGTCCCTATTGAAAAGCTTGCTGTCCACTTTCATGATACTTATGGGCAAGCTCTTTCAAATATTC
TAGCATCACTTCAAATGGGGATCAGCACAGTTGATTCATCAGTTTCTGGTCTGGGGGGTTGCCCATATGCTAAAGGTGCTTCTGGGAATGTTGCCACTGA
AGATGTTGTTTACATGCTCAATGGTCTTGGGGTCAAGACCAATGTGGATCTGCAGAAGATCATGTTGGCTGGGAATTTCATCCGCAAGCATTTGGGACAC
TCATCTGGTTCAAAAACAGCAATTGCCTTGAGCAAAATCACAGCTCATGCCTCCAAACTTTAA
AA sequence
>Potri.006G036800.1 pacid=42769410 polypeptide=Potri.006G036800.1.p locus=Potri.006G036800 ID=Potri.006G036800.1.v4.1 annot-version=v4.1
MITTKALSKFSRSCSFLHHRNFVPMKPILDGATTNDMAPTNSFLKGVNDTREAVSWSGQTRRMSQRGFLNHSRSILGWNSMEIDNVHDALRLPSRHFSTY
YNDKLRRESTNELFSSIPEYVKIVEVGPRDGLQNEKDIVPTAVKVELIKMLASSGLPVVEATSFVSPKWVPQLADAKDVMEAIRDFKGARFPVLTPNLKG
FEAAIAAGAKEVAVFASASEGFSKSNINCSIEDSLVRYHEVALSASKLSIPVRGYISCVVGCPVEGMVSPSKVAYVAKKLCDMGCYEISLGDTIGVGTPG
TVIPMLEAVIDVVPIEKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLQKIMLAGNFIRKHLGH
SSGSKTAIALSKITAHASKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26800 Aldolase superfamily protein (... Potri.006G036800
[exp]
0 1
AT1G01770 unknown protein Potri.002G157400
[exp]
3.16 0.6557
AT3G30841 Cofactor-independent phosphogl... Potri.004G106200
[exp]
5.65 0.6338
AT4G10970 unknown protein Potri.003G140700
[exp]
5.91 0.6215
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Potri.008G216800
[exp]
7.54 0.6454
AT4G26190 Haloacid dehalogenase-like hyd... Potri.015G059000
[exp]
11.31 0.6164
AT3G04460 PEX12, ATPEX12,... ABERRANT PEROXISOME MORPHOLOGY... Potri.013G047800
[exp]
11.91 0.6692
AT1G11880 transferases, transferring hex... Potri.003G216900
[exp]
24.00 0.5726
AT2G30110 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-... Potri.001G280600
[exp]
28.98 0.5657 Pt-ATUBA1.5
AT3G15920 Phox (PX) domain-containing pr... Potri.001G201900
[exp]
29.39 0.6277
AT4G19540 INDH, INDL IND1(iron-sulfur protein requi... Potri.002G042600
[exp]
30.78 0.6057

Potri.006G036800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.