Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PIN8,Pt-PIN2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73590 740 / 0 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT2G01420 716 / 0 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G23080 715 / 0 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 707 / 0 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT5G57090 688 / 0 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G77110 513 / 3e-177 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G15100 202 / 2e-59 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 187 / 8e-54 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035300 [exp] 1110 / 0 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 837 / 0 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 825 / 0 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 772 / 0 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 757 / 0 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 739 / 0 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 535 / 0 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 520 / 6e-180 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 517 / 2e-179 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009054 [exp] 757 / 0 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 664 / 0 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009685 [exp] 476 / 2e-165 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 445 / 1e-152 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 380 / 1e-127 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018006 [exp] 338 / 5e-114 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 303 / 5e-101 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 294 / 2e-97 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 281 / 2e-92 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 285 / 8e-88 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.006G037000.1 pacid=42768980 polypeptide=Potri.006G037000.1.p locus=Potri.006G037000 ID=Potri.006G037000.1.v4.1 annot-version=v4.1 ATGATCAGTCTCACAGACCTTTACCATGTTCTCACAGCTGTGGTACCACTTTATGTGGCCATGATTTTGGCTTATGGTTCAGTCAAATGGTGGAAAATAT TTAGCCCTGACCAATGTTCAGGGATCAACAGATTTGTGGCTCTATTCGCTGTACCTTTGCTTTCTTTTCACTTCATTTCCACCAACAACCCCTATGCTAT GAACTACAGGTTCATTGCAGCAGATACTCTTCAAAAAATCATAGTCTTGGTGGTTTTAGCTATTTGGACCAGAGTTATCTCTAGAGGCTCCCTTGAATGG TCCATTACTTTGTTTTCACTCTCTACTCTCCCAAACACTCTTGTTATGGGCATCCCTTTGTTGAAGGGTATGTATGGAGAAGCCTCAGGGAGTCTTATGG TCCAAATAGTTGTTCTTCAATGCATAATATGGTACACATTGATGCTGTTCTTGTTTGAGTATAGAGGAGCTAGAATCTTGATTGGTGAACAGTTTCCCGA TACTGCTGGTTCTATAATATCATTCAGGGTTGACTCTGATATTCTTTCTTTAGATGGTAGAGAGCCATTGCAAACTGATGCTGAAGTCGGTGAAGATGGG AAGTTACATGTTACTGTTAGGAAATCAACTAGCTCGAGATCAGACGTGTTTTCTCGGATGTCTCATGGTCTAAACTCGGGCCTTTCAATGACTCCTAGAC CGTCTAATTTAACCAACGCAGAGATATACTCCCTTCAATCTTCTAGGAATCCTACCCCAAGAGCCTCCAGTTTTAACCATACTGATTTTTATTCTAAGAA TGCAAGCAATGCCAGTCCAAGACACTCGAACTTCAGTAACCTGCAATTTGATGAAGAAAGTGGAGGGCTTGGGGTGTTTGGTAATGTTCCAAGAGCAAAT GGAAGCGCTTATCCTACTCCACCTAATGCTGGGATCTTTTCTCCCGGGGGTAAAAAGAAGGCAAACGGGACTGAGAATGGCAAGGATTTGCATATGTTTG TTTGGAGTTCAAGTGCTTCACCAGTATCAGAAGGTGGCCTACATGTCTTTAGGGGAGGGGATTATGGCAATGACCTTGGTGGGGTAGCTAACCAAAAAGA TTATGAAGAATTTGGTCGAGATGAGTTCAGCTTTGGAAACAGACCTGTACCTAATGGGGTAGACCGTGACGGTCCAGTGCTTTCTAAGCTTGCTTCAAGC TCCACAGCTGAGCTGCACCCAAAGAGTGCTGCTAATGGTGAACCGAAGCCAACTGCCATGCCTCCTACTAGCGTTGTGACAAGACTCATTCTCATTATGG TGTGGAGAAAACTTATCAGGAATCCCAATACTTATTCCAGTCTAATTGGGCTCACATGGTCTCTTGTTTCGTTCAAGTGGGACTTGGAGATGCCTCAAAT AATTGCTCATTCTATATCTATTCTATCCGATGCTGGTCTTGGAATGGCCATGTTTAGTCTTGGTTTGTTCATGGCATTGCAGCCTAGGATTATTGCTTGT GGAAACTCAGTTGCTGCCTTTGCCATGAGTGTTAGATTCCTCACTGGTCCTGCAGTCATGGCTGCTGCTTCATTTGCTGTTGGACTACGAGGAGTTCTAC TGCACATTGCCATAGTGCAGTCAGCTCTTCCACAAGGGATTGTGCCCTTTGTCTTTGCAAAGGAATACAATGTTCATCCTGACATACTGAGCACTGGAGT TATATTTGGGATGCTAATTGCTTTGCCAATCACACTGGTTTACTATATTTTGCTTGGACTTTGA
AA sequence Show only first row Show all	>Potri.006G037000.1 pacid=42768980 polypeptide=Potri.006G037000.1.p locus=Potri.006G037000 ID=Potri.006G037000.1.v4.1 annot-version=v4.1 MISLTDLYHVLTAVVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFISTNNPYAMNYRFIAADTLQKIIVLVVLAIWTRVISRGSLEW SITLFSLSTLPNTLVMGIPLLKGMYGEASGSLMVQIVVLQCIIWYTLMLFLFEYRGARILIGEQFPDTAGSIISFRVDSDILSLDGREPLQTDAEVGEDG KLHVTVRKSTSSRSDVFSRMSHGLNSGLSMTPRPSNLTNAEIYSLQSSRNPTPRASSFNHTDFYSKNASNASPRHSNFSNLQFDEESGGLGVFGNVPRAN GSAYPTPPNAGIFSPGGKKKANGTENGKDLHMFVWSSSASPVSEGGLHVFRGGDYGNDLGGVANQKDYEEFGRDEFSFGNRPVPNGVDRDGPVLSKLASS STAELHPKSAANGEPKPTAMPPTSVVTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFKWDLEMPQIIAHSISILSDAGLGMAMFSLGLFMALQPRIIAC GNSVAAFAMSVRFLTGPAVMAAASFAVGLRGVLLHIAIVQSALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.006G037000 [exp]	0	1	PIN8,Pt-PIN2.2
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Potri.006G006600 [exp]	5.65	0.9427
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.017G019900 [exp]	6.48	0.9069
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Potri.006G006900 [exp]	8.94	0.9378	Pt-ZIP4.1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003000 [exp]	9.48	0.8919
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Potri.006G006800 [exp]	9.94	0.9276	Pt-ZIP4.4
AT5G04980			DNAse I-like superfamily prote...		Potri.010G247800 [exp]	13.56	0.8908
AT4G04745			unknown protein		Potri.004G016800 [exp]	23.23	0.9162
AT3G24240			Leucine-rich repeat receptor-l...		Potri.001G052500 [exp]	25.49	0.8901
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004200 [exp]	28.67	0.9123
AT5G26010			Protein phosphatase 2C family ...		Potri.018G059800 [exp]	35.74	0.9038

Compare expression of checked genes

Potri.006G037000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.