Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56970 184 / 7e-58 bHLH ORG2, bHLH038 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56980 155 / 2e-46 bHLH ORG3, bHLH039 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 149 / 3e-44 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41240 142 / 1e-41 bHLH bHLH100 basic helix-loop-helix protein 100 (.1.2) AT1G71200 52 / 5e-08 bHLH bHLH160 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G16430 49 / 9e-07 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 47 / 2e-06 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 45 / 6e-06 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 47 / 8e-06 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 43 / 0.0002 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G037300 [exp] 358 / 5e-126 AT3G56970 162 / 5e-49 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037200 [exp] 316 / 2e-109 AT3G56970 168 / 2e-51 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G113400 [exp] 53 / 3e-08 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 46 / 6e-06 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G148800 [exp] 47 / 1e-05 AT5G56960 204 / 4e-59 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G172101 [exp] 44 / 5e-05 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.018G141600 [exp] 44 / 5e-05 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G081400 [exp] 44 / 6e-05 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G074900 [exp] 44 / 6e-05 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039006 [exp] 141 / 2e-40 AT3G56970 142 / 1e-40 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027300 [exp] 139 / 9e-40 AT3G56970 139 / 2e-39 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010453 [exp] 120 / 2e-32 AT3G56970 126 / 8e-35 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003823 [exp] 99 / 2e-24 AT3G56970 129 / 1e-35 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 47 / 6e-06 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10027394 [exp] 45 / 1e-05 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 45 / 2e-05 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006951 [exp] 44 / 3e-05 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10003488 [exp] 45 / 4e-05 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 44 / 4e-05 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G037600.1 pacid=42770138 polypeptide=Potri.006G037600.1.p locus=Potri.006G037600 ID=Potri.006G037600.1.v4.1 annot-version=v4.1 ATGTTAGAATTTTCTCCTACTACTTTGTTTTCAACATTTGGATGGCCCTTGGAGGAACCCATAAGCCATGAACAAAACTACAGCTTTAGAGATTGTGAAA CTCCAGGGTCATTCACTCACTTCCCTCCATCTCAGCCAAATATAAGAGAGCTTGATCGCTCCACCTCATTCACGGCCTATAGTGGAAGTGGTGATCCTAA CATGGTTAAGAAGCTTAACCACAACGCTAGCGAACGTGATCGTCGCAAGAAGATCAACAGTTTGTATTCTTCACTCCGTTCACTTCTTCCAGCTTCCGAT GGAATGAAGAAATTAAGCATACCGTCCACAATTTCACGTGTGCTTAAGTACATACCAGAACTTCAACAGCAAGTGGAGAGACGGATCCAAAGGAAGGAGG AGCTTCTATCAAATCTATCTAGGCAAGATGATTTAATTCATCAAGAAAATCAAAGAAAAGACACCATGTATAGCTCTTTATCATCGGTATCGGCAAGCCG GCTTGGTGATAGAGAAGTTGTCGTTCAAATTTCCACTTGCAAGGTCCTTAAAAGCCCAATATCAGAAATCTTGCTTAATTTAGAGGAAAATGGACTTGTT CTAATAAATTCTTCTTCCTTTGAGTCCTTTGGAGGCAACGTCTTCTACCATTTACATCTTCAGGTCATGGAAGGAAATTGCACATTAGAGTGCGAGGCTT TGAATGAGAAGCTTTTGTCCTTATGTACGAAGAGGGAAACCTTTTTTCTATAA
AA sequence Show only first row Show all	>Potri.006G037600.1 pacid=42770138 polypeptide=Potri.006G037600.1.p locus=Potri.006G037600 ID=Potri.006G037600.1.v4.1 annot-version=v4.1 MLEFSPTTLFSTFGWPLEEPISHEQNYSFRDCETPGSFTHFPPSQPNIRELDRSTSFTAYSGSGDPNMVKKLNHNASERDRRKKINSLYSSLRSLLPASD GMKKLSIPSTISRVLKYIPELQQQVERRIQRKEELLSNLSRQDDLIHQENQRKDTMYSSLSSVSASRLGDREVVVQISTCKVLKSPISEILLNLEENGLV LINSSSFESFGGNVFYHLHLQVMEGNCTLECEALNEKLLSLCTKRETFFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.006G037600 [exp]	0	1
AT5G53110			RING/U-box superfamily protein...		Potri.015G017800 [exp]	2.23	0.9453
AT1G52780			Protein of unknown function (D...		Potri.006G187000 [exp]	6.00	0.9433
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029200 [exp]	12.12	0.9379
AT1G54120			unknown protein		Potri.001G167600 [exp]	13.00	0.9164
AT5G19890			Peroxidase superfamily protein...		Potri.003G214500 [exp]	14.00	0.9330	PRX1.10
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003000 [exp]	17.74	0.8898
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G185900 [exp]	19.74	0.9283
AT2G41705			camphor resistance CrcB family...		Potri.002G086800 [exp]	21.07	0.9168
AT5G05340			Peroxidase superfamily protein...		Potri.006G107000 [exp]	25.76	0.9210	PRX1.13
AT1G14540			Peroxidase superfamily protein...		Potri.001G458700 [exp]	28.14	0.9173

Compare expression of checked genes

Potri.006G037600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.