Plant FIBer expression Database

Pt-GLU1.2 (Potri.006G038400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-GLU1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04140 2831 / 0 GLS1, GLUS, GLU1, FD-GOGAT FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2)
AT2G41220 2757 / 0 GLU2 glutamate synthase 2 (.1)
AT5G53460 1205 / 0 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G036900
[exp]
3124 / 0 AT5G04140 2813 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2)
Potri.012G011700
[exp]
1231 / 0 AT5G53460 3649 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
Potri.015G017500
[exp]
1216 / 0 AT5G53460 3665 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010457
[exp]
2860 / 0 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2)
Lus10003820
[exp]
1460 / 0 AT2G41220 1401 / 0.0 glutamate synthase 2 (.1)
Lus10000390
[exp]
1203 / 0 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
Lus10019021
[exp]
622 / 0 AT5G53460 1273 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
Lus10019020
[exp]
209 / 1e-55 AT5G53460 1280 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0052 NTN PF00310 GATase_2 Glutamine amidotransferases class-II
CL0052 PF01493 GXGXG GXGXG motif
CL0036 TIM_barrel PF01645 Glu_synthase Conserved region in glutamate synthase
CL0036 TIM_barrel PF04898 Glu_syn_central Glutamate synthase central domain
Representative CDS sequence
>Potri.006G038400.4 pacid=42769065 polypeptide=Potri.006G038400.4.p locus=Potri.006G038400 ID=Potri.006G038400.4.v4.1 annot-version=v4.1
ATGGCTTCTCTTCAATCACCATTAATCTCTCCGGTTCCGCAACTCGTCAATGCAACAACACCGAACTCAGTTAATAAGAACTTATTATTTGTTGATTTTG
TTGGACTCTACTGTAAATCGAAGAGAACTAGAAGGAAAATCGGAGTTTCTTCTTCTTTTTCCTCGAGTTTCTCTCGATTTGCTAACAAAAAGAAGTCCTC
CTGTCCAGTCAACGCCACTCTCAGTGTTGACCGTCGTAATATCTCACCGCCGTCTTCTCCTCCTCATCCTCCTCCTGATTTGAAACCGCAGGTAGCAAAC
TTGGAAGATATATTATCAGAAAGAGGAGCATGTGGAGTTGGATTTATCGCGAATTTGGAAAACAAGCCGTCCCATGCGATTGTCAAGGATGCACTTACAG
CTCTTGGCTGCATGGAACATCGTGGAGGTTGTGGAGCAGATAATGACTCTGGTGATGGTTCAGGACTAATGACTTCGATTCCGTGGGAGCTATTCGATAA
GTGGGCTGAGAGTGAAGGGATTGGTTCTTTTGATAAATTGCATACTGGTGTCGGAATGATTTTTTTCCCTAAAGATGATAACCTTATGAAAGAAGCAAAA
GAAGTGATTGTAAATATTTTTAAACAAGAGGGCCTTGAGGTGCTCGGATGGAGGCCTGTTCCTGTAAATACATCTGTAGTTGGTTTTTACGCAAAAGAAA
CCATGCCCAACATAGAACAAGTATTTGTTAGAGTTATTAACGAAGAGGATGTTGATGACATTGAACGAGAACTGTATATCTGCCGGAAGCTGATTGAAAG
AGCGGCAAACTCAGAAAGTTGGGGAAATGAGCTTTATTTCTGTTCTTTGTCTAATCGAACAATTGTTTATAAGGGAATGCTTCGTTCTGAAGTTCTTAGG
CTGTTTTATTCTGACCTTCAGAATGATATCTACAAATCACCTTTTGCCATTTATCATAGAAGGTATAGCACAAATACTAGTCCCAGATGGCCTCTTGCTC
AACCCATGCGGTTTCTTGGTCATAATGGAGAGATCAACACCATACAGGGTAACTTGAACTGGATGCAATCACGAGAAACCTCATTGAAATCTTCTGTTTG
GCATGGTCGAGAAAATGAAATCCGTCCTTATGGGAACCCAAAGGCATCAGACTCAGCTAATCTTGACAGTGCAGCAGAATTGTTAATAAGAAGTGGGCGC
ACTCCTGAGCACGCGTTGATGGTTCTCGTACCAGAGGCATACAAGAATCATCCAACTTTGACCATCAAATATCCTGAGGTTGTAGATTTTTATGATTATT
ACAAGGGTCAGATGGAAGCTTGGGATGGACCTGCTCTACTCTTATTCAGTGATGGAAAGACAGTTGGGGCTTGTCTTGATCGGAATGGCCTTCGCCCTGC
TAGATATTGGCGGACAGTCGACAATTTTGTCTATGTTGCATCTGAGGTTGGGGTTGTACCAATGGATGAATCAAAAGTAACGATGAAAGGCCGTCTAGGT
CCCGGAATGATGATAACTGTAGATTTGCCTGGTGGCCAGGTTTATGAGAATACTGAAGTTAAAAAGCGAGTAGCACTGTCAAATCCGTATGGAAAATGGG
TTCATGAAAACCTGCGATCCTTGAAGTCTACAAACTTCCTCTCAGCAACAGTTATGGACAATGAATCAATTTTAAGATGCCAACAGGCATTCGGCTACTC
CAGTGAGGATGTCCAAATGGTTATTGAGAATATGGCTTCTCAAGGGAAGGAGCCTACATTTTGCATGGGGGATGATATTCCTTTGGCAATATTGTCTCAA
AAACCACACATGCTTTATGATTATTTCAAACAACGGTTTGCACAGGTTACAAATCCAGCTATAGACCCACTCAGAGAAGGATTAGTTATGTCACTTGAAA
TCAACATCGGAAAGCGAGGAAACATCTTGGAAGATGGACCAGAAAATGCTTCACAGGTTATCTTGTCTAGTCCTGTACTAAATGAAGGGGAGCTTGAGTT
ATTACTGAAGGATCCCTACTTAAAACCTCAAGTTTTACCAACCTTTTTTGATATACGTAAAGGGGTTGAGGGTTCTTTGGAGAAAACACTGATTAAGCTT
TGTGCGGCAGCTGATGAAGCTGTTAGAAATGGTTCCCAATTGCTTGTTCTCTCTGACCGATCTGATGATCTGGAACCCACTCGACCTGCAATCCCAATTC
TTCTTGCTGTTGGTGCTGTTCATCAGCATCTTATTCAGAATGGCCTGCGAATGTCAACTTCAATTGTAGCAGACACTGCTCAGTGCTTCAGCACTCATCA
TTTTGCCTGTTTGATTGGATATGGTGCCAGTGCTATATGCCCGTACTTGGCACTGGAAACTTGCCGGCAATGGCGCTTGAGTAAAAGAACTGTGAATCTG
ATGATGAATGGAAAGATGCCTACTGTAACAATCGAACAAGCTCAAAAGAACTTTTGCAAGGCAGTTAAATCTGGTCTTCTCAAAATTCTTTCTAAGATGG
GCATCTCATTGCTTTCAAGTTATTGTGGTGCACAGATATTTGAGATTTATGGATTGGGGAAGGAGGTTGTTGATCTAGCATTTTGTGGCAGTGTTTCAAA
TATTGGTGGAGTGACTTTTGATGAGTTGGCGAGGGAGACTTTGTCCTTCTGGGTGAAAGCTTTCTCTGAGGCTACGGCCAAAAGACTGGAAAATTATGGA
TTTATACAATTCAGACCTGGAGGGGAATATCATGGAAACAATCCAGAGATGTCGAAATTGCTTCACAAAGCTGTTCGCCAAAAGAGTGAAAATGCATTTT
CTATTTATCAGCAACATTTGGCTAACCGGCCTGTGAATGTTCTTCGTGATCTTCTTGAATTTAAAAGTGATCGTGCTCCAATTCCTGTGGGAAAGGTTGA
ACCTGCCATATCCATAGTTCAAAGGTTTTGCACTGGGGGGATGTCACTTGGAGCCATTTCAAGAGAAACTCATGAAGCAATTGCCATTGCTATGAACAGA
TTAGGTGGAAAATCTAATTCAGGGGAAGGTGGTGAGGATCCAATTCGCTGGACCCCACTTTCTGATGTTGTTGATGGGTACTCCCCTACATTGCCGCATC
TTAAAGGTCTTCAAAATGGTGATACTGCTACCAGCGCTATCAAGCAGGTTGCTTCAGGACGTTTTGGTGTCACTCCAACATTCTTGGTCAACGCTGTTCA
GTTAGAAATCAAAATCGCACAGGGTGCCAAGCCTGGTGAAGGTGGCCAATTGCCTGGGAAGAAAGTTAGTGCATATATTGCGAGGCTGAGAAATTCTAAA
CCTGGGGTTCCACTTATATCCCCACCCCCTCACCATGACATTTATTCCATTGAAGATCTTGCCCAATTGATCTATGACCTTCATCAGGTCAATCCTAAGG
CTAAGGTATCTGTAAAGCTTGTGGCAGAAGCAGGTATTGGCACAGTTGCATCTGGGGTAGCAAAGGGTAATGCTGATGTTATACAGATATCAGGGCATGA
TGGTGGAACTGGAGCTAGCCCCATAAGTTCCATTAAGCATGCCGGTGGTCCTTGGGAACTTGGACTTACAGAAACCCATCAGACTCTCGTTGCAAATGGG
CTTAGAGAAAGAGTGATCCTTAGGGTTGATGGGGGCTTCAAAAGCGGAGTTGATGTCCTGATGGCTGCGGCAATGGGTGCTGACGAGTATGGATTTGGTT
CTGTCGCAATGATTGCTACGGGATGTGTAATGGCCCGCATTTGTCACACTAATAATTGCCCTGTTGGTGTTGCTAGTCAGAGAGAAGAACTACGCGCCCG
GTTTCCTGGTGTGCCTGGTGATCTTGTTAATTTCTTTTTATATGTTGCTGAGGAGGTAAGAGGCATGCTGGCACAACTGGGTTATCAGAAGTTGGATGAT
ATCATTGGGCATACAGATTTGTTAAGACAACGAGATATTTCCCTTGTCAAAACTCAGCATCTTGATCTCAGTTATATTATGTCGAGTGTAGGATTACCAA
AACTGAGCAGTACTGATATCAGGAACCAAGATGTACACTCTAATGGTCCTGTTTTAGATGATGTTGTTCTAGCAGATCCAGAGATTCTAGATGCTATTGA
GAATGAAAAAGTTGTCAATAAAACCATAAAAATATACAATGTGGACCGTGCTGTTTGTGGGCGTATAGCAGGTGTGGTTGCAAAGAAATATGGTGACACT
GGTTTTGCTGGGCAGCTGAACATCACGTTTACTGGGAGTGCTGGGCAGTCGTTTGCATGTTTTTTGACACCTGGAATGAATATTCGCCTAATAGGAGAGG
CCAATGATTACGTGGGAAAGGGTATGGCTGGAGGAGAGTTGGTCGTAACTCCCGTGGAGAACACTGGGTTTGTTCCGGAGGACGCCACCATTGTCGGGAA
TACTTGCTTGTATGGGGCTACAGGCGGTCAAGTATTTGTCAGAGGGAAAGCTGGGGAGCGGTTTGCTGTGAGAAACTCACTTGCTGAAGCTGTAGTTGAA
GGCACTGGAGACCATTGTTGTGAGTACATGACTGGTGGTTGTGTGGTGGTACTTGGAAAAGTGGGTAGAAATGTAGCTGCTGGGATGACCGGAGGTTTGG
CGTACATGCTTGATGAGGATGACACTTTGATGCCCAAGGTAAATAAAGAAATAGTGAAGGTCCAAAGAGTGACTGCTCCTGTTGGCCAGATGCAGCTAAA
GAGCCTTATTGAAGCTCATGTTGAAAAAACCGGAAGCGGCAAAGGCGCTGCTATCCTGAAGGAGTGGGACACATATCTACCGCTCTTTTGGCAGCTAGTA
CCACCCAGTGAAGAAGACACCCCAGAGGCTTGTGCATCATTCGAGGCAACCAGTGCTGGGCAAGTGACATCATTCCAATCTGCATAA
AA sequence
>Potri.006G038400.4 pacid=42769065 polypeptide=Potri.006G038400.4.p locus=Potri.006G038400 ID=Potri.006G038400.4.v4.1 annot-version=v4.1
MASLQSPLISPVPQLVNATTPNSVNKNLLFVDFVGLYCKSKRTRRKIGVSSSFSSSFSRFANKKKSSCPVNATLSVDRRNISPPSSPPHPPPDLKPQVAN
LEDILSERGACGVGFIANLENKPSHAIVKDALTALGCMEHRGGCGADNDSGDGSGLMTSIPWELFDKWAESEGIGSFDKLHTGVGMIFFPKDDNLMKEAK
EVIVNIFKQEGLEVLGWRPVPVNTSVVGFYAKETMPNIEQVFVRVINEEDVDDIERELYICRKLIERAANSESWGNELYFCSLSNRTIVYKGMLRSEVLR
LFYSDLQNDIYKSPFAIYHRRYSTNTSPRWPLAQPMRFLGHNGEINTIQGNLNWMQSRETSLKSSVWHGRENEIRPYGNPKASDSANLDSAAELLIRSGR
TPEHALMVLVPEAYKNHPTLTIKYPEVVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTVDNFVYVASEVGVVPMDESKVTMKGRLG
PGMMITVDLPGGQVYENTEVKKRVALSNPYGKWVHENLRSLKSTNFLSATVMDNESILRCQQAFGYSSEDVQMVIENMASQGKEPTFCMGDDIPLAILSQ
KPHMLYDYFKQRFAQVTNPAIDPLREGLVMSLEINIGKRGNILEDGPENASQVILSSPVLNEGELELLLKDPYLKPQVLPTFFDIRKGVEGSLEKTLIKL
CAAADEAVRNGSQLLVLSDRSDDLEPTRPAIPILLAVGAVHQHLIQNGLRMSTSIVADTAQCFSTHHFACLIGYGASAICPYLALETCRQWRLSKRTVNL
MMNGKMPTVTIEQAQKNFCKAVKSGLLKILSKMGISLLSSYCGAQIFEIYGLGKEVVDLAFCGSVSNIGGVTFDELARETLSFWVKAFSEATAKRLENYG
FIQFRPGGEYHGNNPEMSKLLHKAVRQKSENAFSIYQQHLANRPVNVLRDLLEFKSDRAPIPVGKVEPAISIVQRFCTGGMSLGAISRETHEAIAIAMNR
LGGKSNSGEGGEDPIRWTPLSDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLVNAVQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSK
PGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADVIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLVANG
LRERVILRVDGGFKSGVDVLMAAAMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNFFLYVAEEVRGMLAQLGYQKLDD
IIGHTDLLRQRDISLVKTQHLDLSYIMSSVGLPKLSSTDIRNQDVHSNGPVLDDVVLADPEILDAIENEKVVNKTIKIYNVDRAVCGRIAGVVAKKYGDT
GFAGQLNITFTGSAGQSFACFLTPGMNIRLIGEANDYVGKGMAGGELVVTPVENTGFVPEDATIVGNTCLYGATGGQVFVRGKAGERFAVRNSLAEAVVE
GTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYMLDEDDTLMPKVNKEIVKVQRVTAPVGQMQLKSLIEAHVEKTGSGKGAAILKEWDTYLPLFWQLV
PPSEEDTPEACASFEATSAGQVTSFQSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04140 GLS1, GLUS, GLU... FERREDOXIN-DEPENDENT GLUTAMATE... Potri.006G038400
[exp]
0 1 Pt-GLU1.2
AT5G49760 Leucine-rich repeat protein ki... Potri.004G231700
[exp]
2.00 0.9278
AT5G65500 U-box domain-containing protei... Potri.007G011500
[exp]
2.00 0.9395
AT4G27220 NB-ARC domain-containing disea... Potri.019G013140
[exp]
2.44 0.9258
AT3G59140 ATMRP14, ABCC10 ATP-binding cassette C10, mult... Potri.015G023800
[exp]
3.46 0.9141 Pt-ATMRP14.3
AT1G06840 Leucine-rich repeat protein ki... Potri.013G159500
[exp]
3.74 0.9104
AT1G68570 Major facilitator superfamily ... Potri.010G126300
[exp]
3.74 0.8965
AT4G33630 EX1 EXECUTER1, Protein of unknown ... Potri.017G043100
[exp]
5.00 0.9142
AT5G49760 Leucine-rich repeat protein ki... Potri.004G231850
[exp]
7.54 0.8922
AT1G76890 Trihelix AT-GT2, GT2 Duplicated homeodomain-like su... Potri.002G068400
[exp]
8.24 0.9194
AT1G20780 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-B... Potri.001G024600
[exp]
8.66 0.8959

Potri.006G038400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.