Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19400 619 / 0 SMG7 Telomerase activating protein Est1 (.1.2.3) AT1G28260 183 / 2e-47 Telomerase activating protein Est1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275400 [exp] 915 / 0 AT5G19400 759 / 0.0 Telomerase activating protein Est1 (.1.2.3) Potri.004G045300 [exp] 231 / 7e-63 AT1G28260 555 / 0.0 Telomerase activating protein Est1 (.1.2) Potri.011G053800 [exp] 226 / 4e-61 AT1G28260 560 / 0.0 Telomerase activating protein Est1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009689 [exp] 872 / 0 AT5G19400 738 / 0.0 Telomerase activating protein Est1 (.1.2.3) Lus10036041 [exp] 452 / 7e-151 AT5G19400 416 / 3e-136 Telomerase activating protein Est1 (.1.2.3) Lus10015430 [exp] 187 / 7e-49 AT1G28260 483 / 5e-158 Telomerase activating protein Est1 (.1.2) Lus10014007 [exp] 176 / 3e-45 AT1G28260 473 / 4e-154 Telomerase activating protein Est1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF10373 [poplar] [flax] EST1_DNA_bind Est1 DNA/RNA binding domain CL0020 [poplar] [flax] TPR PF10374 [poplar] [flax] EST1 Telomerase activating protein Est1
Representative CDS sequence Show only first row Show all	>Potri.006G038500.6 pacid=42768169 polypeptide=Potri.006G038500.6.p locus=Potri.006G038500 ID=Potri.006G038500.6.v4.1 annot-version=v4.1 ATGACGGTTCCGATGGATAATCCAGTGGATCTTTCATCGCGGGACCGTGTTCAACGTCTTTATGACAAGAATGTTGAGTTGGGCAATAGGCTTCGGAGGT CAGCCCAAGCAAGAATTCCATCTGATTTTACTGTTTGGCAACAGATGCGAGAGAATTATGAGGCAATTATCCTAGAAGATCATGCTTTCTCGGAGCAACA TGAAATAGAATATGCTTTGTGGCAGTTGCATTACCGGCGTATTGAGGAGTTTCGAACTCATTGCAAAGCTGCTCTAGCTTCAAATGGTTCAGTTACATCT CAGAATGGAACAATGATTGCAAGACCTGAACGAATTACAAAAATTCGTTCTCAGTTTAAAACCTTTCTGTCTGAAGCAACTGGATTCTATCATGATTTAA TGTTGAAAATCAGAGCAAAGTGTGGTCTTCCTCTAGTTTCTTTTTCAGATAATTCGGAGAGTCAGAATATTATGTGTGGAGAAGGAAATAAAGCTACTAT GATGAGGAAAGGCCTGATTTCCTGCCACCGTTGTCTGATTTACCTTGGTGACCTTTCACGTTATAAAGGCTTATATGGTGAAGGAGACTCAAAAATAAGT GATTTTTCAGCCGCGTCAAGTTACTATAAGCAAGCTTCTTCATTGTGGCCTTCAAGTGGCAACCCTCACCACCAGCTTGGAATATTAGCTACTTATTCAG GGTATGAATTTGAAGCAATATACTGCTACTTTAGGAGTCTAGCTGTTGACAACCCCTTCTCAACTGCCAGAGATAACTTGATTATTGAATTTGAGAAGAA TCGTCAAAGTTTTTCCCAGCTCTGTGGGGATGCCAAAGCTTCATTGACGAAGAATGCAACAAGGCAAATCGGTAGGAGAGGAAGAGGCAGAGGTAGCAAA ATGTCTCCCTTGAAAGACAATAAAAAAGATGCAAGTGCTCTAAAGAAAAACACATCCAGTATTCCTGAAACTTTAAAAGCTTTCAAAATTAGATTTGTCC GACTAAATGGCATCCTATTTACACGAACAAGTTTGGAAACTTTTGTAGAGGTTCTTTCAATGGTCAAAAGTGACTTGCTTGAACTTCTGTCGTCTGGGCC AAAAGAAGAGTACAATTTTGATTCAAGTGCTGAGGATAATGGGCTTGTGATTGTTAGGCTTATATCCATTCTTATATTCACAATCCATAATGTGAATCGG GAAGCTAAGCTTGAGTCATATGCTGACATCTTGCAACGCTCAGTTTTGCTTCAGAATGCTTTTACTGCCATTTTTGACTTGATGGGGCTCGTTATTAAGA GATGCACACAACTGAATGATCCTTTGGCTAGCTTTCTGTTGCCTGGAGTGATGATTTTTTTGGAGTGGTTAGCCTGTCATCCAGATTTTGCTACTGGCAT CGAAGTGGAAGAGCATCAAGCTGCTGCTAGATTGTTCTTTTGGGAGAATTGTATTTCTTTTTTGAACAAGCTCTTGTCAAATGGGACCATGCCCATTGAT GTGGACGGAGAGGATGCTTGTTTTTCCAACATGAGCAGCTATGATGAAAGTGAAACCTCCAACAGGCTTGCATTGTGGGAGGACTTCGAATTGAGAGGGT TTTTGCCTCTTGCTCCAGCACAATTGATTCTTGATTTTTCAAGGAAGCAATCTGTCACAAGTGATGTTGGTGTTAAGGAGAAAAAGGCATGTCTTCAGAG GATTCTATATGCTGGAAAAGCTCTTGTAAGCCTAGTTCGGGTTGGGCAGCAAGGCATGTATTTTGACTCAGAGTCGAAGAAATTTGCCATTGGTGCTGAG CCTCAAACAGCCCATAGTTTTGAGGTGGCTGCTTCTCTTGAAATGTCTTTAAATGTTTCGGGGCAAAAATATCCAGCTGTGGAGAAATTGAGTGTGGAAC AGACTCCGTTATACATGGATGGGGAAGAAGAGGATGAGGTGATTATTTTTAAGCCGTTGATGACTGATAGGCACTTTGATGTCAATGCTCTTGAGTTGTC TACTTTTGAGATTCCAAGTAATGCCTCTCAAGGCAACATGGAGAGCTGTATAGGATCTGTTCCTGTCTCTTGTGATTCTTATTATCTGTCAAATGGTTTC AATAGAAGCACAGTTGGCCCTAAATCTCCTGCTTCTGTTGCCCCCCTGCATTTTCAAGCATTGCAGCCTACCGCTTCAAAATGGCCTGCCAAATCTGAAG GATCCATTTCCAATGGGCTGAACAACTTCAATTTGGTAGGGTATGGGCTTGTTATGAAGAGTGGGTTGCAAGAACACCAAGTAGTTTTGCAGCCTTCTGC AGTTTCACTTCCTCTTCCACTCTTTGTGAACCCTAGTGCTGGTAACCTGCTACCCGCTAAGGTTCCTGATACTGTAGTACACTTGAAATCTGAGCCAGTC ATGTCTTCTGTCTCTGGTTTTGACAGTCTGTCCTTGAAGGCATCATCAGTGTTCCCAGCTAGTTCAAGATTGAATCCAGTAAGCCGTCCTGTTCATCACC TTGGTCCTCCACCTGGATTTAGCTCTGTTCCTCCTAAGGCCAAATGTGAGATCTTATCTGGCATTGGTCAGGAGAATTATGATTTTCATATGGATGATTA TAGCTGGCTTGATGGATATCAGCCACCGTCATCAGCAAAAGCAACTGTGTTTAACAATTCTATCAATCACCCTGAACAATCTTGTCATCATACGACAGCG AATGATGGCCTGACAGGAACAAGAATGTTTCCATTTCCTGGCAAGCAACTCCAAACATTTCCTATGAAAATTGAAAGCCAGAATGGCTCGTTGAACCGCC AGCTTCCTGATCATCTGAAACTATACCAGGAGTGGCAACAGCAGCAACTTGCAAAAATAGGCTAG
AA sequence Show only first row Show all	>Potri.006G038500.6 pacid=42768169 polypeptide=Potri.006G038500.6.p locus=Potri.006G038500 ID=Potri.006G038500.6.v4.1 annot-version=v4.1 MTVPMDNPVDLSSRDRVQRLYDKNVELGNRLRRSAQARIPSDFTVWQQMRENYEAIILEDHAFSEQHEIEYALWQLHYRRIEEFRTHCKAALASNGSVTS QNGTMIARPERITKIRSQFKTFLSEATGFYHDLMLKIRAKCGLPLVSFSDNSESQNIMCGEGNKATMMRKGLISCHRCLIYLGDLSRYKGLYGEGDSKIS DFSAASSYYKQASSLWPSSGNPHHQLGILATYSGYEFEAIYCYFRSLAVDNPFSTARDNLIIEFEKNRQSFSQLCGDAKASLTKNATRQIGRRGRGRGSK MSPLKDNKKDASALKKNTSSIPETLKAFKIRFVRLNGILFTRTSLETFVEVLSMVKSDLLELLSSGPKEEYNFDSSAEDNGLVIVRLISILIFTIHNVNR EAKLESYADILQRSVLLQNAFTAIFDLMGLVIKRCTQLNDPLASFLLPGVMIFLEWLACHPDFATGIEVEEHQAAARLFFWENCISFLNKLLSNGTMPID VDGEDACFSNMSSYDESETSNRLALWEDFELRGFLPLAPAQLILDFSRKQSVTSDVGVKEKKACLQRILYAGKALVSLVRVGQQGMYFDSESKKFAIGAE PQTAHSFEVAASLEMSLNVSGQKYPAVEKLSVEQTPLYMDGEEEDEVIIFKPLMTDRHFDVNALELSTFEIPSNASQGNMESCIGSVPVSCDSYYLSNGF NRSTVGPKSPASVAPLHFQALQPTASKWPAKSEGSISNGLNNFNLVGYGLVMKSGLQEHQVVLQPSAVSLPLPLFVNPSAGNLLPAKVPDTVVHLKSEPV MSSVSGFDSLSLKASSVFPASSRLNPVSRPVHHLGPPPGFSSVPPKAKCEILSGIGQENYDFHMDDYSWLDGYQPPSSAKATVFNNSINHPEQSCHHTTA NDGLTGTRMFPFPGKQLQTFPMKIESQNGSLNRQLPDHLKLYQEWQQQQLAKIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19400		SMG7	Telomerase activating protein ...		Potri.006G038500 [exp]	0	1
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	2.44	0.8655
AT1G70590			F-box family protein (.1)		Potri.010G045300 [exp]	3.87	0.8026
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Potri.006G085700 [exp]	10.81	0.8146
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	11.48	0.8065
AT3G26000			Ribonuclease inhibitor (.1)		Potri.010G054600 [exp]	11.53	0.8004
AT4G20400		PKDM7B, JMJ14	JUMONJI 14 (.1.2)		Potri.001G440900 [exp]	12.96	0.7484
AT5G23490			unknown protein		Potri.004G133700 [exp]	14.49	0.7592
AT5G13950			unknown protein		Potri.002G237800 [exp]	17.72	0.8308
AT2G44280			Major facilitator superfamily ...		Potri.009G024600 [exp]	18.16	0.7892
AT1G77840			Translation initiation factor ...		Potri.017G122200 [exp]	24.00	0.6994

Compare expression of checked genes

Potri.006G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.