Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06950 413 / 2e-143 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 412 / 4e-143 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 390 / 3e-134 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 355 / 1e-118 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G08320 321 / 1e-106 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 304 / 3e-99 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G10030 293 / 9e-96 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G22070 288 / 2e-93 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G65210 281 / 9e-92 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G77920 276 / 7e-89 bZIP bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036500 [exp] 741 / 0 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 548 / 0 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.001G029800 [exp] 528 / 0 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 408 / 2e-139 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G058800 [exp] 342 / 1e-112 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 329 / 7e-108 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 327 / 3e-107 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 325 / 3e-106 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.007G085700 [exp] 298 / 1e-97 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008658 [exp] 466 / 4e-164 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 460 / 1e-161 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 459 / 3e-161 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10041475 [exp] 344 / 9e-114 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10004876 [exp] 338 / 4e-111 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 336 / 5e-110 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10023822 [exp] 325 / 1e-106 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10034296 [exp] 318 / 6e-104 AT1G68640 427 / 1e-146 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10043387 [exp] 315 / 4e-103 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 309 / 2e-100 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.006G039000.1 pacid=42769949 polypeptide=Potri.006G039000.1.p locus=Potri.006G039000 ID=Potri.006G039000.1.v4.1 annot-version=v4.1 ATGGGGAGTAGAACGCATAATAATTTTAATAATAATAATAATAATAATAAAGCTGTGACCGAGATGCCAAGCTATGTACCTCAGCTATCCACTTCTAATC CCATTGGCACAGAAGCAAATAACATTCATCCTTCTCGAGTTTCAGACTTTGCCACATTTGAGCAATCTCTTGGGTTTCGCATAGATGATGCTGTTGATCT TAGCAGAAATTCTATCTTTAATCAATTAAAATCTAGCAGCCAGGCAATAGGTGCTGATGTCCAGTTTGGCACTTTAAATAAGTCCCTTGCATCCTCAGAT ATAAATCTATCAGCTGCCATTGTGGGGTCCCAGACATTACCATTGCAAAAAGAAGTGCAAGTAAATCCAGTTTCTATACACAGCAACCATCCTGAGAATT GGGGAGAGACCAATATGGCAGAAGCCAGTCCTAGAACTGATACCTCAACAGATGACACAGATGAAAAAAATCAAAGGTTTGAGAGAGGACAATTAGTTGC AATAGCAGCATCCGATTCCAGTGACAAGTCAAAGGAAAGAGCAGGGGATCAGAAGACTTTAAGAAGGCTTGCTCAAAATCGTGAAGCTGCCAGAAAAAGC CGATTAAGGAAAAAAGCATATGTACAACAACTGGAGAGCAGCCGGCTGAAGCTGACTCAACTGGAGCAAGAGCTCCAGAAAGCCCGGCAACAGGGAATTT TCATTTCAAGCTCAGGAGACCAAACCCATTCAATGAGTGGAAATGGTGCCTTGGCATTTGATGCAGAGTATGCACGGTGGCTAGAAGAACATAACAGGCA AATAAGTGAGCTGAGGGCTGCAGTCAATTCGCATGCAGGAGATACTGAACTTCGTACTATTGTCGACAATGTTGCTTCACACTTCAGTGATGTTTTCAGG CTGAAAGGCACTGCTGCAAAAGCTGATGTTTTCCACATCCTATCAGGGATGTGGAAGACACCAGCAGAGCGTTGTTTCATGTGGATTGGTGGCTTTCGCT CATCTGAACTCCTCAAGCTTCTTGTGAATCAACTGGAGCCTCTAACTGAGCAACAGCTAATGGGCATTTACAACTTGCAACAATCTTCTCAGCAGGCAGA AGATGCTCTCTCACAAGGGATGGAAGCGCTGCAGCAATCACTGGCAGAAACCTTGGCTAATGGCAACCCTGGCTCATCAGGTTCTTCTGGGAACGTGGCA AACTATATGGGTCAAATGGCCATGGCCATGGGAAAGCTAGGAACTCTAGAGGGATTCCTTCGTCAGGCTGATAATCTGAGGCAGCAAACACTAGAACAAA TGCACCGTATATTGACAACTCGGCAATCAGCCCGTGCTCTTCTAGCTATACATGACTATTTCTCTAGGCTACGAGCCCTTAGTTCTCTCTGGTTGGCCCG GCCACAGGAATGA
AA sequence Show only first row Show all	>Potri.006G039000.1 pacid=42769949 polypeptide=Potri.006G039000.1.p locus=Potri.006G039000 ID=Potri.006G039000.1.v4.1 annot-version=v4.1 MGSRTHNNFNNNNNNNKAVTEMPSYVPQLSTSNPIGTEANNIHPSRVSDFATFEQSLGFRIDDAVDLSRNSIFNQLKSSSQAIGADVQFGTLNKSLASSD INLSAAIVGSQTLPLQKEVQVNPVSIHSNHPENWGETNMAEASPRTDTSTDDTDEKNQRFERGQLVAIAASDSSDKSKERAGDQKTLRRLAQNREAARKS RLRKKAYVQQLESSRLKLTQLEQELQKARQQGIFISSSGDQTHSMSGNGALAFDAEYARWLEEHNRQISELRAAVNSHAGDTELRTIVDNVASHFSDVFR LKGTAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMEALQQSLAETLANGNPGSSGSSGNVA NYMGQMAMAMGKLGTLEGFLRQADNLRQQTLEQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	0	1
AT4G13970			zinc ion binding (.1)		Potri.014G054600 [exp]	1.00	0.9180
AT2G47210	MYB		myb-like transcription factor ...		Potri.014G117400 [exp]	2.64	0.9001
AT1G36310			S-adenosyl-L-methionine-depend...		Potri.002G091300 [exp]	2.82	0.9021
AT5G63120			P-loop containing nucleoside t...		Potri.015G083000 [exp]	2.82	0.8974
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	3.16	0.9068
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.006G067700 [exp]	3.46	0.9002
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	3.87	0.9055
AT3G07565			Protein of unknown function (D...		Potri.007G132700 [exp]	6.00	0.8934
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.008G032000 [exp]	6.78	0.8829	Pt-RAB1.9
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	7.93	0.8967

Compare expression of checked genes

Potri.006G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.