Plant FIBer expression Database

Potri.006G039100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G09225 64 / 1e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G036400
[exp]
72 / 6e-19 AT5G09225 72 / 6e-19 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033507
[exp]
73 / 1e-18 AT5G09225 75 / 4e-19 unknown protein
Lus10020870
[exp]
71 / 2e-18 AT5G09225 74 / 1e-19 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G039100.3 pacid=42768834 polypeptide=Potri.006G039100.3.p locus=Potri.006G039100 ID=Potri.006G039100.3.v4.1 annot-version=v4.1
ATGCCGCATAGAACACGGCCGATGACTGCACTGCTGGTGTTCACTGGACTCAATGTGATCTTGGTATCAACCATTACTCCAGTCTATGATTTTGTTTGCT
TCCTTCCTCACTGGGAAAGAAGGAGAGAACGTCACCGTCAGGACCGTCAAGCTGATGCCTTAACAAAGGGTTCCAGATGA
AA sequence
>Potri.006G039100.3 pacid=42768834 polypeptide=Potri.006G039100.3.p locus=Potri.006G039100 ID=Potri.006G039100.3.v4.1 annot-version=v4.1
MPHRTRPMTALLVFTGLNVILVSTITPVYDFVCFLPHWERRRERHRQDRQADALTKGSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G09225 unknown protein Potri.006G039100
[exp]
0 1
AT5G09225 unknown protein Potri.016G036400
[exp]
4.24 0.8094
AT3G22845 emp24/gp25L/p24 family/GOLD fa... Potri.010G081700
[exp]
27.92 0.8167
AT2G22425 Microsomal signal peptidase 12... Potri.008G175775
[exp]
28.14 0.8465
AT5G44710 unknown protein Potri.003G155000
[exp]
31.30 0.8291
AT4G30220 RUXF small nuclear ribonucleoprotei... Potri.018G092200
[exp]
32.12 0.8213
AT1G27435 unknown protein Potri.001G325000
[exp]
39.74 0.7804
AT1G27330 Ribosome associated membrane p... Potri.003G171100
[exp]
44.02 0.7900
AT5G65270 AtRABA4a RAB GTPase homolog A4A (.1) Potri.005G073000
[exp]
48.78 0.7578 Pt-ATGB3.3
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Potri.001G369000
[exp]
53.99 0.8176
AT1G07950 MED22B Surfeit locus protein 5 subuni... Potri.008G080700
[exp]
57.96 0.7671

Potri.006G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.