Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24764 649 / 0 ATMAP70-2 microtubule-associated proteins 70-2 (.1) AT1G68060 644 / 0 ATMAP70-1 microtubule-associated proteins 70-1 (.1) AT1G14840 623 / 0 ATMAP70-4 microtubule-associated proteins 70-4 (.1.2) AT2G01750 621 / 0 ATMAP70-3 microtubule-associated proteins 70-3 (.1.2) AT4G17220 321 / 1e-102 ATMAP70-5 microtubule-associated proteins 70-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036300 [exp] 853 / 0 AT1G68060 619 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.008G135100 [exp] 664 / 0 AT1G24764 804 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.010G106100 [exp] 662 / 0 AT1G68060 751 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.016G006900 [exp] 386 / 5e-127 AT4G17220 453 / 1e-154 microtubule-associated proteins 70-5 (.1) Potri.006G018000 [exp] 386 / 5e-127 AT4G17220 464 / 5e-159 microtubule-associated proteins 70-5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013238 [exp] 662 / 0 AT1G24764 910 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10030758 [exp] 662 / 0 AT1G24764 918 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10019171 [exp] 402 / 3e-135 AT1G24764 546 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10038790 [exp] 390 / 5e-129 AT4G17220 473 / 5e-163 microtubule-associated proteins 70-5 (.1) Lus10000642 [exp] 298 / 7e-96 AT1G24764 403 / 1e-136 microtubule-associated proteins 70-2 (.1) Lus10039069 [exp] 72 / 3e-15 AT1G24764 71 / 8e-16 microtubule-associated proteins 70-2 (.1) Lus10003908 [exp] 66 / 4e-13 AT4G17220 98 / 3e-25 microtubule-associated proteins 70-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07058 [poplar] [flax] MAP70 Microtubule-associated protein 70
Representative CDS sequence Show only first row Show all	>Potri.006G039200.5 pacid=42769278 polypeptide=Potri.006G039200.5.p locus=Potri.006G039200 ID=Potri.006G039200.5.v4.1 annot-version=v4.1 ATGGGAAGTAACCACCACCACCACCACATTATCAGCAACGGAGAAGCCGAGCCACTGGCCAAGCCGACACTAACAACGTCGGCTTCGTTCAAGACACGGA AGCCGGTGAAGGCAAATGCGAACAACAACTCGAACAGTACTGCAACTCTCTCTCGAGCCGGCTCTGATGTCGATGAAATCATCACTCTTTTACACGGCTC CGATCCCGTTCGCGTTGAACTTAACCGCCTCGAAAACGAGCTTCGAGATAAAGATAGGGAATTGGGAGAGGCACTAGCGGAAATCAAATCCTTGAAGAAT TCGGAACGATCGAAAGAGAAGGCTGTCGAAGAGCTTACCGACGAGCTAGATAAAGTGGATGAAAAGCTTAAAGCTACTGAAGCTCTTTTGGAAAGCAAGA ACCTTGAGATCAAGAAAATAAATGATGAGAAAAAAGCAGCTTTGGCTGCGCAATTTGCTGCAGAAGCCACGCTTCGAAGAGTCCATGCTGCTCAAAAGGA CGATGAAATGCCTCCTATTGAGGCCATCATCACTCCTCTGGAGGCAGAGCTTAAGCTGGCTAGGCTGGAGGTAGCAAAGTTGCAAGATGATAATAGAGCA CTGGATCGGCTCACAAAATCGAAGGAGGCTGCTCTCCTTGAGGCTGAGAGAACTGTTCAGATTGCTCTGGCGAAAGCATCCCTGGTTGATGATCTGCAAA ACAAAAATCAAGAGCTCATGAAGCAGATTGAAATATGCCAGGAGGAAAACAAAATCCTTGACAAAATGCACAGGCAAAAGGTTGCAGAAGTTGAAAAGCT GATGCAAACTGTCCATGAGCTCGAGGAGGCTGTCTTAGCTGGAGGCGCTGCTGCTAATGCTGTGCGCGATTACCAGCGAAAAGTACAAGAGATGAATGAG GAGAAAAAAACACTGGAACGGGAAGTAGCTCGTGCAAAGGTCTCAGCAAACAGGGTAGCTACTGTAGTTGCAAATGAGTGGAAAGACGGCAATGACAAGG TTATGCCTGTGAAGCAATGGCTTGAGGAAAGAAGATTTTTTCAGGGGGAAATGCAACAGCTTCGAGATAAATTGGCAGTTGCAGAACGTGCTGCCAAGGC AGAAGCACAGTTAAAAGATAAATACCAATTAAGGTTCAAGGTTTTGGAGGAAAGGCTTAAAGCATCAAATGGTAATTCCCGTGCTACACCTGAAGGAAAA AACACAAGCAACGGGCCTTCAAGACGTCAGTCTCTTGGTGGAGCGGAGAATTTTTCCAGATCATCCTTCAATGGTTATCTATCTAGGAAAGCCTCAAATT CACAAGCTGGTTCTCTCCGATCCAACGGTGCTGCCACATTATTGAGACATGCCAAGATGTCATCAAGATCGTTTGATGGAGGTAGTAGATCACTAGATGA TAAGTTGCTTGTAGGTGGAACTGGTAAAGATAATGCACCTGCTGCCGCCTCTGATCAGACCCAAAATACTGAGAGAATCGAGACCGAAGAGATTGAGAAT GGGACATCAACTGAAAATTCGAAATCAGAGCAAGAAGATCAAGTTTCAGGATTTTTGTATGATATGTTACAGAAAGACGTTATTGCTCTGAGGAAAGCCT GCCACGAAAAAGATCAAAGCCTTAAGGACAAGGCTGATGCAATCGAGATGTTGGCAAAGAAAGTCGATACATTGAACAAAGCAATGGAAGTTGAGGCGAA AAAGATGCGGAGGGAAGTCGCTGCAAGGGAAAAGGAAGTCGCTGCTATGCGAGTTAACAAGGAGCATGATCATAGGACGCAACGCAGCAGTGCTCCCAGG GCTTCTCTGTTACTCCCTTCGAGGAGCACAAGAAATTCTTACGCAATTGATGCCACCGAGAGACAATGA
AA sequence Show only first row Show all	>Potri.006G039200.5 pacid=42769278 polypeptide=Potri.006G039200.5.p locus=Potri.006G039200 ID=Potri.006G039200.5.v4.1 annot-version=v4.1 MGSNHHHHHIISNGEAEPLAKPTLTTSASFKTRKPVKANANNNSNSTATLSRAGSDVDEIITLLHGSDPVRVELNRLENELRDKDRELGEALAEIKSLKN SERSKEKAVEELTDELDKVDEKLKATEALLESKNLEIKKINDEKKAALAAQFAAEATLRRVHAAQKDDEMPPIEAIITPLEAELKLARLEVAKLQDDNRA LDRLTKSKEAALLEAERTVQIALAKASLVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLMQTVHELEEAVLAGGAAANAVRDYQRKVQEMNE EKKTLEREVARAKVSANRVATVVANEWKDGNDKVMPVKQWLEERRFFQGEMQQLRDKLAVAERAAKAEAQLKDKYQLRFKVLEERLKASNGNSRATPEGK NTSNGPSRRQSLGGAENFSRSSFNGYLSRKASNSQAGSLRSNGAATLLRHAKMSSRSFDGGSRSLDDKLLVGGTGKDNAPAAASDQTQNTERIETEEIEN GTSTENSKSEQEDQVSGFLYDMLQKDVIALRKACHEKDQSLKDKADAIEMLAKKVDTLNKAMEVEAKKMRREVAAREKEVAAMRVNKEHDHRTQRSSAPR ASLLLPSRSTRNSYAIDATERQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.006G039200 [exp]	0	1
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.008G038450 [exp]	1.41	0.9270
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	1.73	0.9155
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G178500 [exp]	2.64	0.9077
AT3G57830			Leucine-rich repeat protein ki...		Potri.016G050800 [exp]	2.82	0.9222
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.008G094200 [exp]	3.46	0.9127	Pt-HIUHASE.1
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Potri.002G207500 [exp]	3.46	0.9094
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.006G010500 [exp]	3.87	0.9101	Pt-GDI1.1
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Potri.001G116800 [exp]	4.35	0.8808	Pt-PHR1.2
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	5.19	0.8961
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.016G013700 [exp]	12.00	0.8904	GDI1.2

Compare expression of checked genes

Potri.006G039200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.