Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59590 347 / 2e-115 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G11340 347 / 3e-115 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 332 / 3e-109 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G59580 332 / 3e-109 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G46670 327 / 2e-107 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G46680 323 / 4e-106 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 321 / 3e-105 UDP-Glycosyltransferase superfamily protein (.1) AT3G46650 320 / 6e-105 UDP-Glycosyltransferase superfamily protein (.1) AT5G38010 318 / 5e-104 UDP-Glycosyltransferase superfamily protein (.1) AT2G26480 312 / 1e-101 UGT76D1 UDP-glucosyl transferase 76D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195600 [exp] 397 / 1e-134 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G245900 [exp] 387 / 4e-131 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.010G195300 [exp] 378 / 2e-127 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 374 / 1e-125 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G313000 [exp] 310 / 2e-100 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G095000 [exp] 287 / 2e-91 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073766 [exp] 286 / 2e-91 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 286 / 2e-91 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G052166 [exp] 286 / 5e-91 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040246 [exp] 379 / 2e-127 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 375 / 3e-126 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10016460 [exp] 370 / 3e-124 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 346 / 7e-115 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 342 / 4e-113 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 327 / 4e-107 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 311 / 5e-101 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10004672 [exp] 309 / 9e-100 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 271 / 4e-85 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 270 / 4e-85 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.006G039300.2 pacid=42769133 polypeptide=Potri.006G039300.2.p locus=Potri.006G039300 ID=Potri.006G039300.2.v4.1 annot-version=v4.1 ATGGAATTAAACTTTAGCAGTACAAGAACATATAAACCTTCTATATCAAGGACATCGCAACATATGCAAGTGAACATGGAACTTGAAACAGAAGCCTGGA ACATGAAGAACAAGCAAGTCGGAAAGAGAAAAGGTCATTTGTTGCTTGTCCCTTGCCCCTTGCAAGGTCACATGAACCCAATGCTTCACTTGGCCACAAT TCTTCATTCTCATGGTTTCCTAATCACCATTACTGAAACACAGCCCAGCTCTCCAGTAGTATTCCCTCCTCACCGCCCTGATTTCTTGTTTGAATCCATT GATGGATTGGATAACAGCCCTAGTGAAATATTCAAAGGGGATGTTGTCACGTTCTTATACACACTTAACACAAAGTGTAAAGCACCATTCCATGATTGCT TGTCAAGGATTCAAACGAACAGCACACAGGGTCCTGTAACATGCATCATCCATGACGCAGTCATGTTCTTTTCCGTAGATGTTGCAGATGATATGAAGAT TCCAAGGATTGTCTTGAGGACAAGCAGTGCCACCAATTTCTATGGGCTTTCACTTCTCAAGCAAAAGGGTGATCTACTTGCAATCCAAGCAGAACAACAA TTATTGGAGGAACCACTTGATGAGATTCCTTTTTTAAGAGTTAAGGACATGCCATTGTTCAACAAATCCAACCAAGAAGTTGTAGACAGGGTTTTTGATC CCATTGATGATGGAACCAGGACAGCTTCAGCTATAATTTGGAACTCTCTTAGCTGCCTAGAACAAGCAATCTGTGATAAATTCAAATCAAAAATTGGAGC CCCAATGTTCTGTATTGGACCTCTTCATAAGCACTCAAACGCTGCTCTAAGCAGTTTTTTGACCGAAGAGCAAAGCTGCATCTCTTGGCTTGACACACAA AGGTCAAATTCTGTCATTTATGTAAGCATTGGTAGCTTAGTTATGATAACGGAAACTGAACTGGCTGAGATGGCCTGGGGGCTGGCCAATAGTGGTCATC CATTTTTGTGGGTGATTCGACCTGGTTTGGTCCACGGCTCAAATGGGTTCGATCTCTTGCCTACAGAATTTGAAAATATTACGAAGAAAAGAGGTCGAAT AGTTGGCTGGGCACCACAAAAGGAGGTGCTGGCGCATCAAACTATAGGAGCATTTTGGACTCACAATGGTTGGAACTCAACCATCGAGAGTATTAGCGAA GGGGTCCCTATGCTTTGTTGGCCCCATGTGGGAGACCAGAAGGTGAATGCAAGGCTGGTTAGTCATTTATGGAGAGTTGGGATCCAGTTGGAGAGATTGG AGAGAGGAAATATAGAGGACTATATCAGAAGGTTAATGGCGGGTGAGGAAGGAAAGCAAACCAAAATGAGGGCTATGCAGCTGAAGGAGAAGATCGACGT TTCAATAAGAGAAGGAGGTTCTTCTCATGAATCTGTTGGCAACTTGATCACTTTTATCAACTTGTTACTGAGTTGTTAA
AA sequence Show only first row Show all	>Potri.006G039300.2 pacid=42769133 polypeptide=Potri.006G039300.2.p locus=Potri.006G039300 ID=Potri.006G039300.2.v4.1 annot-version=v4.1 MELNFSSTRTYKPSISRTSQHMQVNMELETEAWNMKNKQVGKRKGHLLLVPCPLQGHMNPMLHLATILHSHGFLITITETQPSSPVVFPPHRPDFLFESI DGLDNSPSEIFKGDVVTFLYTLNTKCKAPFHDCLSRIQTNSTQGPVTCIIHDAVMFFSVDVADDMKIPRIVLRTSSATNFYGLSLLKQKGDLLAIQAEQQ LLEEPLDEIPFLRVKDMPLFNKSNQEVVDRVFDPIDDGTRTASAIIWNSLSCLEQAICDKFKSKIGAPMFCIGPLHKHSNAALSSFLTEEQSCISWLDTQ RSNSVIYVSIGSLVMITETELAEMAWGLANSGHPFLWVIRPGLVHGSNGFDLLPTEFENITKKRGRIVGWAPQKEVLAHQTIGAFWTHNGWNSTIESISE GVPMLCWPHVGDQKVNARLVSHLWRVGIQLERLERGNIEDYIRRLMAGEEGKQTKMRAMQLKEKIDVSIREGGSSHESVGNLITFINLLLSC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Potri.006G039300 [exp]	0	1
					Potri.006G183466 [exp]	3.87	0.7594
AT3G62930			Thioredoxin superfamily protei...		Potri.002G209000 [exp]	5.19	0.7591
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	5.47	0.7594
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	8.48	0.7087
AT3G62930			Thioredoxin superfamily protei...		Potri.002G208700 [exp]	9.16	0.6901	PtrGrx20
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100800 [exp]	10.95	0.6966
					Potri.005G006000 [exp]	13.78	0.6421
AT5G18600			Thioredoxin superfamily protei...		Potri.010G021800 [exp]	14.83	0.6316
AT4G26490			Late embryogenesis abundant (L...		Potri.001G468400 [exp]	14.86	0.6225
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.003G156900 [exp]	15.58	0.6586

Compare expression of checked genes

Potri.006G039300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.