Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63840 75 / 2e-13 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT3G45940 70 / 6e-12 Glycosyl hydrolases family 31 protein (.1) AT5G11720 69 / 1e-11 Glycosyl hydrolases family 31 protein (.1) AT1G68560 64 / 4e-10 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069000 [exp] 77 / 4e-14 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.007G100000 [exp] 75 / 1e-13 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 71 / 3e-12 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 71 / 4e-12 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.010G125800 [exp] 70 / 8e-12 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.008G120000 [exp] 69 / 1e-11 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.001G442800 [exp] 68 / 3e-11 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 66 / 1e-10 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031003 [exp] 1113 / 0 AT3G45940 97 / 3e-20 Glycosyl hydrolases family 31 protein (.1) Lus10035399 [exp] 117 / 2e-30 ND 44 / 8e-06 Lus10008067 [exp] 77 / 6e-14 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10033490 [exp] 76 / 1e-13 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10035020 [exp] 71 / 3e-12 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 71 / 5e-12 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 69 / 1e-11 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10034315 [exp] 69 / 1e-11 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10038408 [exp] 69 / 2e-11 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 67 / 6e-11 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01055 [poplar] [flax] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Potri.006G039500.1 pacid=42767089 polypeptide=Potri.006G039500.1.p locus=Potri.006G039500 ID=Potri.006G039500.1.v4.1 annot-version=v4.1 ATGGGAACCCTCAAAATCACCAAAAAGCATCATAAACACCTAAACAACCCCTTCCCTTCGACACCAAGATCACTTCCTTTCATTCAAGGACGTCTTCTTT TCAATTCTCAAACTGTCCCACCAAACAAAATCTTCTCAGTTGGCAAGGATTTCCAGCTTCTTTGGAGCATAAAAAATGGAGGGTCTCTCTCAATTTATCA TCAGTCTCAACCTACAAAAGCCCTGTGGTCTACCATCCCAGGGCAAGCTTTTGTTACTGCAGCATTGTGTGAGACAGAGGTGGAAGAGAGCAGAGGATCT TTTGCTATAAAAGATAGGAATGTTTATTTGGTTTGTGATCATCAAACAATTGAAGATATAAGAGTGATCAGTGAACCTGATCACCATTTTGATCAGGAAA ATGATCATGATCTTTCATCTGGGAATATGAGTTTTGCTCAGAAAAATGATTGGAAGGATACCCAGTTTCCTGCTTTGGTGATAACAGGTTGGTTGTTCAG TAACAGGAGGAAGAAGAGGCATCAAGAATCTGGCATTTACAAAGACATACAGTTTGAGACAAGGGGACCACCAACTTGTGCAAGGTATTGGGTTCTATTT GATCAAAAGAATAATAACCAAATTGGTTTTCAAGTGAGAGTTGGACCACCAAATTTTGAATTCCAACAAAGAATTTCCCCAACTCCTTTAGGAAGACACC GGCGATTAAGGTGGAAGCTAGGAAAGATTAGAAGACGAAAGCTTGGATGGTATCGGTTCTTTACAAGGTCTAGAGGGTTTGTTGCAGTTTCTTCCTCGTC AGAGGAGGAAATGGAAATGAAGTCTGCGGAGTTGACAGAATTCAATAGAGTCTGTATTACCTATTCCAGTGAAGGAAATGAAAGGTTTTACGGTTTTGGG GAGCAGTTCTCTCATATGGACTTCAAAGGCAAAAGGGTGCCCATTTTTGTTCAAGAGCAAGGAATTGGAAGAGGAGACCAACCAATTACTTTTGCTGCTA ACTTGGTTAGCTACAGGGCTGGGGGCGATTGGAGTACAACTTATGCTCCTTCACCATTCTACATGACATCTAAGATGAGGTCTCTTTACCTTGAAGGATA CGATTATTCAGTATTCGACATGACAAGACATGACAGAGTTCAAATACAGATTCAGAGCAATTCAGTTCGAGGAAGAATATTGAATGGCAACTCACCTTCT GAGATTATTGAAAACTTCACAGAAACTATCGGGAGACCTCCTGAGCTTCCTAAGTGGATTATATCTGGGGCTGTTGTTGGAATGCAAGGTGGTACAGAAG CTGTACGACGTGTTTGGGATGAATTGAAGGATCACAAGGTTCCTGTTTCAGCCTTTTGGTTGCAGGATTGGGTAGGGCAGAGGGAGACAATGATTGGATC ACAACTGTGGTGGAATTGGGAGGTAGATACAACGAGGTATCATGGATGGCAGCAGCTAATTAACGATCTCGGTGCAAAGAATATTAATGTGATGACATAC TGTAATCCTTGTCTAGCTCCGACTGATGAGAAACCAAACCAAAGGAGAAACCTTTTTGAGGAGGCAAAAAAGCTGGATATCCTGGTGAAAGACAAGTATG GAGAACCATATATGGTTCCAAATACAGCATTTGATGTGGGCATGTTGGACCTGACACACCCAGATACTGCTGCTTGGTTTAAGCAGGTTTTACAGGAAAT GGTTGATGATGGTGTGAAAGGGTGGATGGCTGATTTCGGTGAAGGACTGCCTGTAGATGCAACTCTCTATTCAGGTGAAGATCCTATATCAGCTCATAAT AGATACCCAGAGCTATGGGCCCAAATAAACCGAGAGTTTGTGGAAGAATGGAAGTCAGGTCGTGCAGGTAAGGAGAGAGAAGACCCAGAAGAGGCTTTGG TCTTCTTCATGAGGGCTGGTTTCAGGGATAGCCCCAAATGGGGGATGCTATTTTGGGAAGGAGATCAAATGGTAAGTTGGCAGGCCAATGATGGAATAAA AAGTTCTGTTGTTGGCCTACTGAGCAGTGGAATTTCTGGATATGCTTTCAATCATAGCGATATCGGAGGCTATTGTGCAGTAAACTTACCTTTTATTAAG TACCACCGAAGTGAAGAGTTGCTCATGCGATGGATGGAGCTAAATGCTTTCACCACTGTTTTCCGGACTCATGAAGGAAACAAGCCATCCTGCAACAGCC AATTCTACTCTAACCACAAGACTCTATCGCATTTTGCACGCTGTGCTAAGTTGTACAAAGCTTGGTATTTCTACAGAATCCAACTAGTGAAGGAAGCTGC TCGAAAAGGCCTACCAGTTTGCCGCCACCTATTTCTCCACTATCCAAATGATAGGAATGTGCATAGCTTGAGTTACCAGCAGTTCTTGATTGGTACCGAG ATCTTAGTGGTGCCTGTCCTTGACAAGGGCAAGAAGAATGTCAAGGCTTATTTTCCAGAGGGTGAAACTTGTTCCTGGCAGCATATCTGGTCAGGAAAAC TATTTAAAGAACAAGGTTCGGAAGCCTGGGTAGAGGCTCCAGTTGGCTATCCTCCTGTATTTATTAAGGCTGGCTCCACTGTGGGAGAAACATTTGTAGA AAATCTGAGAAATTTTGGCATTCTTTGA
AA sequence Show only first row Show all	>Potri.006G039500.1 pacid=42767089 polypeptide=Potri.006G039500.1.p locus=Potri.006G039500 ID=Potri.006G039500.1.v4.1 annot-version=v4.1 MGTLKITKKHHKHLNNPFPSTPRSLPFIQGRLLFNSQTVPPNKIFSVGKDFQLLWSIKNGGSLSIYHQSQPTKALWSTIPGQAFVTAALCETEVEESRGS FAIKDRNVYLVCDHQTIEDIRVISEPDHHFDQENDHDLSSGNMSFAQKNDWKDTQFPALVITGWLFSNRRKKRHQESGIYKDIQFETRGPPTCARYWVLF DQKNNNQIGFQVRVGPPNFEFQQRISPTPLGRHRRLRWKLGKIRRRKLGWYRFFTRSRGFVAVSSSSEEEMEMKSAELTEFNRVCITYSSEGNERFYGFG EQFSHMDFKGKRVPIFVQEQGIGRGDQPITFAANLVSYRAGGDWSTTYAPSPFYMTSKMRSLYLEGYDYSVFDMTRHDRVQIQIQSNSVRGRILNGNSPS EIIENFTETIGRPPELPKWIISGAVVGMQGGTEAVRRVWDELKDHKVPVSAFWLQDWVGQRETMIGSQLWWNWEVDTTRYHGWQQLINDLGAKNINVMTY CNPCLAPTDEKPNQRRNLFEEAKKLDILVKDKYGEPYMVPNTAFDVGMLDLTHPDTAAWFKQVLQEMVDDGVKGWMADFGEGLPVDATLYSGEDPISAHN RYPELWAQINREFVEEWKSGRAGKEREDPEEALVFFMRAGFRDSPKWGMLFWEGDQMVSWQANDGIKSSVVGLLSSGISGYAFNHSDIGGYCAVNLPFIK YHRSEELLMRWMELNAFTTVFRTHEGNKPSCNSQFYSNHKTLSHFARCAKLYKAWYFYRIQLVKEAARKGLPVCRHLFLHYPNDRNVHSLSYQQFLIGTE ILVVPVLDKGKKNVKAYFPEGETCSWQHIWSGKLFKEQGSEAWVEAPVGYPPVFIKAGSTVGETFVENLRNFGIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.006G039500 [exp]	0	1
AT2G27480			Calcium-binding EF-hand family...		Potri.004G202200 [exp]	4.35	0.8039
AT2G46550			unknown protein		Potri.002G173200 [exp]	4.58	0.7890
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	6.63	0.7748
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	13.41	0.7536
AT2G37160			Transducin/WD40 repeat-like su...		Potri.006G129100 [exp]	15.49	0.7479
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	17.88	0.7508
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.008G183400 [exp]	18.33	0.7658
AT5G60800			Heavy metal transport/detoxifi...		Potri.009G007600 [exp]	22.00	0.7486
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	22.36	0.7745
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	25.49	0.7230

Compare expression of checked genes

Potri.006G039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.