Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80270 654 / 0 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT1G15480 616 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15590 521 / 3e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 168 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07590 159 / 9e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 143 / 1e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G02150 140 / 3e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 134 / 3e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21705 127 / 3e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 115 / 4e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036100 [exp] 1058 / 0 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.003G193600 [exp] 497 / 6e-170 AT1G80270 442 / 9e-149 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.009G030900 [exp] 175 / 9e-48 AT1G07590 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 155 / 1e-40 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 149 / 3e-38 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 148 / 3e-38 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 147 / 5e-38 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 144 / 3e-37 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 140 / 2e-35 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010430 [exp] 788 / 0 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10012112 [exp] 784 / 0 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10031004 [exp] 592 / 0 AT1G80270 532 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10042757 [exp] 170 / 7e-46 AT1G07590 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 166 / 2e-44 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029724 [exp] 165 / 7e-44 AT1G07590 691 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 157 / 3e-41 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013047 [exp] 155 / 7e-41 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 140 / 1e-35 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022033 [exp] 138 / 4e-35 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.006G039600.1 pacid=42770032 polypeptide=Potri.006G039600.1.p locus=Potri.006G039600 ID=Potri.006G039600.1.v4.1 annot-version=v4.1 ATGTGGGCTCTTCGTCGAGCTTCTAATCCTCTCAAGTTCCGTGGATTGAGTGTTGGAACTTCTCGCGGTTGTTGTGCTAAATCAGAAATAGTATCTAGTT ATGTAGAAGGCAAGGTTGTCACTGTCAAGTCTCCTCAACCTGTATCTCAGAGTCCTCGATTTCACCACAGCACAAATGTTGGTTCAAAGTTCTATTTGGA AAAGCGTGGTTTTGCTTCGCAAGCTGGTGCTGAAAACAGTGGATCAGATGTTGACTTGGAGGATGGGTTCTCTGAACTTGAAACACCAGCTAATGCCAAT GAAAGCACAGTCAATGCATTGGCTGGAAATGAAGATCAGCTAATTTCTGAACCTGAGTTGTCTGATGATGACAATGATGATATTGGAGAACCTTCTCAAA ATGCACTAGAACTGTCAGATAATGAAACAGACTCGGTGGTGAAAAGCTTGCCGAGGAAAAGGCCTACCACAGAACTATTCAACGCCATCGTCTCTGCTCC AGATGTTTCTGTTCAAAGTGTTCTTGACAAGTGGGTGGCAGAAGGAAAGGATTTGGACAGGTTAGAGATATCTAATGCCATGATCAATCTTCGCAAGCGT CGAATGTTTGGGAGGGCTCTACAGCTCTCAGAGTGGTTCGAGGCAAATAAGCCACAAGAATTTGTTGAAAGAGATTATGCTTCACGCCTTGATTTAATTG CAAAGGTGCGTGGTCTCCATAAGGCAGAGGTTTATATCGATAAAATCCCGAAATCCTTTAAAGGGGAGGTGATCTATCGAACCTTGCTGGCTAACTGTGT TGTAGACCATAATGTGAAGAAAGCAGAGGAAGTATTCAATAAAATGAGGGACCTGGAATTCCCAATCACCCCATTTGCTTGCAACCAACTGCTGCTCCTC TACAAGAGGCTTGACAAGAAGAAAATTGCTGATGTGCTGTTATTAATGGAGAAAGAAAATGTCAAGCCCTCTCTTTTTACTTACAAAATCTTAATAGACA CCAAAGGTCAATCCAATGACATGACGGGGATGGATCAAATTGTAGAGACAATGAAGGCTGAAGGCATTGAACCTGATATCAGAACCCAAGCTATCATGGC CAGACACTATGTATCTGGTGGCCTCAAAGAAAAAGCTGAGGCTATTTTGAAAGAGATGGAAGGGGGCAATTTAGAAGAGCATCGATGGGCTTGCCGATTT ATGCTTCCTCTTTATGGTGCGCTTGGGAAAGCTGATGAAGTGAGTAGGGTATGGAAGTTCTGTGAGAAAAGTCCCCGACTTGATGAATGCATGGCTGCCA TTGAAGCCTGGGGACGGCTGAAGAAAATTGATGAAGCTGAGGCAGTTTTTGAGTTGATGTCAAAAACATGGAAGAAGCTTTCTTCAAGGCATTATTCTAC ACTTTTGAAGGTTTATGCAAACCATAAGATGCTATCCAAGGGTAAAGATTTGATCAAGCGAATGGGTGATAGTGGGTGTCGCATCGGCCCTTTGACATGG GATGCACTTGTAAAGCTTTATGTGGAAGCAGGCGAGGTGGAAAAGGCTGACTCTATACTGAATAAGGCTGTCCAACAGAATAAGATAAAACCAATGTATA GTTCTTTCTTAATTATCATGGAGCGATATGCAACGAAGGGTGACATACATAATGCAGAGAAAATGTTTCACCGGATGAGACAAGCTGGTTATCAGGCTCG AATTAGGCAGTTCCAGACTCTAATTCAGGCATATATAATTGCCAAGGCGCCATGTTATGGCATGAGGGAGAGGCTGAAGGCAGATGGTATATTTCCCAAC AAGAGTTTGGCTGCCCAACTTGCTCAGGTTGATGCATTTAGGAGGACAGCAGTTTCGGATTTGCTTGACTGA
AA sequence Show only first row Show all	>Potri.006G039600.1 pacid=42770032 polypeptide=Potri.006G039600.1.p locus=Potri.006G039600 ID=Potri.006G039600.1.v4.1 annot-version=v4.1 MWALRRASNPLKFRGLSVGTSRGCCAKSEIVSSYVEGKVVTVKSPQPVSQSPRFHHSTNVGSKFYLEKRGFASQAGAENSGSDVDLEDGFSELETPANAN ESTVNALAGNEDQLISEPELSDDDNDDIGEPSQNALELSDNETDSVVKSLPRKRPTTELFNAIVSAPDVSVQSVLDKWVAEGKDLDRLEISNAMINLRKR RMFGRALQLSEWFEANKPQEFVERDYASRLDLIAKVRGLHKAEVYIDKIPKSFKGEVIYRTLLANCVVDHNVKKAEEVFNKMRDLEFPITPFACNQLLLL YKRLDKKKIADVLLLMEKENVKPSLFTYKILIDTKGQSNDMTGMDQIVETMKAEGIEPDIRTQAIMARHYVSGGLKEKAEAILKEMEGGNLEEHRWACRF MLPLYGALGKADEVSRVWKFCEKSPRLDECMAAIEAWGRLKKIDEAEAVFELMSKTWKKLSSRHYSTLLKVYANHKMLSKGKDLIKRMGDSGCRIGPLTW DALVKLYVEAGEVEKADSILNKAVQQNKIKPMYSSFLIIMERYATKGDIHNAEKMFHRMRQAGYQARIRQFQTLIQAYIIAKAPCYGMRERLKADGIFPN KSLAAQLAQVDAFRRTAVSDLLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	0	1
AT4G02930			GTP binding Elongation factor ...		Potri.002G215900 [exp]	1.00	0.9108	Pt-TUFA.3
AT1G15870			Mitochondrial glycoprotein fam...		Potri.001G047600 [exp]	1.41	0.9067
AT3G13940			DNA binding;DNA-directed RNA p...		Potri.001G198600 [exp]	1.73	0.9011
AT3G01800			Ribosome recycling factor (.1)		Potri.001G333700 [exp]	3.16	0.8770
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.004G018000 [exp]	4.24	0.8608
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	4.47	0.8869
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.011G089000 [exp]	5.47	0.8526
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	6.00	0.8719
AT1G14060			GCK domain-containing protein ...		Potri.013G109100 [exp]	6.48	0.8272
AT4G05400			copper ion binding (.1.2)		Potri.011G098000 [exp]	7.74	0.8486

Compare expression of checked genes

Potri.006G039600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.