Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04790 122 / 3e-31 EMB3119 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) AT2G01290 115 / 7e-29 RPI2 ribose-5-phosphate isomerase 2 (.1) AT1G71100 110 / 3e-27 RSW10 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) AT5G44520 74 / 2e-14 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G32250 64 / 2e-10 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT1G52520 61 / 2e-09 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT4G12850 56 / 2e-09 FAR1_related Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) AT4G38180 56 / 7e-08 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT3G22170 55 / 9e-08 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT2G43280 53 / 9e-08 FAR1_related Far-red impaired responsive (FAR1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039800 [exp] 434 / 1e-148 AT1G71100 122 / 2e-31 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Potri.001G225700 [exp] 123 / 1e-31 AT2G01290 378 / 1e-133 ribose-5-phosphate isomerase 2 (.1) Potri.008G127600 [exp] 122 / 1e-31 AT2G01290 365 / 2e-128 ribose-5-phosphate isomerase 2 (.1) Potri.010G115300 [exp] 118 / 4e-30 AT2G01290 368 / 1e-129 ribose-5-phosphate isomerase 2 (.1) Potri.005G052000 [exp] 114 / 2e-28 AT3G04790 354 / 9e-124 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.013G039400 [exp] 110 / 6e-27 AT3G04790 379 / 2e-133 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.011G155500 [exp] 86 / 1e-18 AT5G44520 294 / 7e-100 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.017G029400 [exp] 69 / 3e-13 AT2G43280 319 / 4e-112 Far-red impaired responsive (FAR1) family protein (.1) Potri.005G257600 [exp] 61 / 1e-09 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042951 [exp] 132 / 3e-35 AT1G71100 356 / 4e-125 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10032450 [exp] 131 / 1e-34 AT1G71100 362 / 3e-127 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10015919 [exp] 118 / 7e-30 AT3G04790 390 / 4e-138 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10036094 [exp] 117 / 1e-29 AT2G01290 342 / 2e-119 ribose-5-phosphate isomerase 2 (.1) Lus10026777 [exp] 110 / 3e-27 AT1G71100 344 / 3e-120 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10009180 [exp] 100 / 2e-23 AT3G04790 318 / 8e-110 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10008059 [exp] 57 / 1e-08 AT5G44520 290 / 4e-98 NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0246 [poplar] [flax] ISOCOT_Fold PF06026 [poplar] [flax] Rib_5-P_isom_A Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Representative CDS sequence Show only first row Show all	>Potri.006G039700.1 pacid=42767945 polypeptide=Potri.006G039700.1.p locus=Potri.006G039700 ID=Potri.006G039700.1.v4.1 annot-version=v4.1 ATGGAGATGGAAAGTAATTCTATGGTAGATGTACCGTTAAAGAAAGACATAAAAGTGTCTTCTAGTGATAATGAGAAAGTAGACGAACATGGTGTCAGTG GAGTTTTATTAAATGGGGATGGGGAAGTAGAAACACCAAAGATTGGGATGGTTTTTGCCTCTCAAGAAGAAGTTCGTGATTATTATAATAGGTATGCCCA GCGTGTAGGCTTTGGAATAATGCGACGAAGTTCAAGGTGTGATGATGATGGGCGATTGACATATATTGTACTTTCATGCTCGCAATGTGGTAAGGACCGA GGAATTCCAAAGAGTAGGTTCCAATGGAAGCAGACTTCTAAAACGAATTGCAAAGCGAAGATTAATCTTGTACTGAATCCTCAAGGACAGTTCCATATAT GTAATGTTGTTCTTGATCATAATCATGAACTGACTCCAGGACAGTTACACCCAAACATCTGTAAAAAGAGTAAACCCTTTCGAACGAGAAAGGGACGTGA GGGAAAAGAACAGGCTGGAATGATGTTGCATCCAGATTTTCGGTCAATTTTTGGTGAACCTCTGGGCAGTGAGACTGCATCACCAGATTCTGTAATGCAA CGACCCAGCTTTTCAAATCATTTGCTGAATGGTGACAAGCATCTTCTTTGTTCTTACACTGGCCTCCCCACAGGGGAAATCATATCCAATCGTCTCAAGA GGAGAAGCCCAGCCCTTGAAGGTTCCCAAAATTCCCAAGACTACTTAAGGCATGCCCTTGCCAAAAGGGCTGTGGCACTTGTTAAATCTGGAATGGTGAT TGGACTAGGCACTGGAAGAACCTTAACCCTTGTCATTGAGGAGATTGGAAAACTAATTCAAGAAGGAAAGTTGAAAGACATTGTTGCAGTGGGTACAAAC TACCAGTCACGCATTACAGCTCGACAATATGGCATGACAACTGTTGATCTGAATGATGTGAATGACATTGACATTGCATTTGATGTGGTGGATGAAGTCG ATATCAACAAAAACCTATTGAAGTGCAGGGGAGCTAATCATACTGTGCAGAAGGTGATTGATTCAATGGCAAAAGTGTGTATTCTATTGGTTGAACATAC AAAGGTTGTTCACCGGCTTGGTAACAATATTCCAGTAGCGGTGGAAGTTCTCCCTATTGCCGTGTCACCTGTTTTAAGGCGCCTCATTGCTCTTGGAGGA GTTCCTGAAATTCGTTCTGCTTCGAGAAAGGATGGCTCGGTAATCACAGATCTTGGGAATATGGTCGTAGATGTTAGCTTCCCAAGTGGAATACAGAATC CTGCTGACCTTGAGAAGAACATTAACATGATACCTGGTGTAGTTGATAATGGCATTTTTTCTTCGGTTGCGACAATAGTGCTAGTTGTTGTCAGAGACAG AGGTAATATCAAAGTAATGAATTTAGAAGAATTCCTGGAAGGTGTGCCCGGTCACAGAGACGCAAGTTCTTCCCTTTAA
AA sequence Show only first row Show all	>Potri.006G039700.1 pacid=42767945 polypeptide=Potri.006G039700.1.p locus=Potri.006G039700 ID=Potri.006G039700.1.v4.1 annot-version=v4.1 MEMESNSMVDVPLKKDIKVSSSDNEKVDEHGVSGVLLNGDGEVETPKIGMVFASQEEVRDYYNRYAQRVGFGIMRRSSRCDDDGRLTYIVLSCSQCGKDR GIPKSRFQWKQTSKTNCKAKINLVLNPQGQFHICNVVLDHNHELTPGQLHPNICKKSKPFRTRKGREGKEQAGMMLHPDFRSIFGEPLGSETASPDSVMQ RPSFSNHLLNGDKHLLCSYTGLPTGEIISNRLKRRSPALEGSQNSQDYLRHALAKRAVALVKSGMVIGLGTGRTLTLVIEEIGKLIQEGKLKDIVAVGTN YQSRITARQYGMTTVDLNDVNDIDIAFDVVDEVDINKNLLKCRGANHTVQKVIDSMAKVCILLVEHTKVVHRLGNNIPVAVEVLPIAVSPVLRRLIALGG VPEIRSASRKDGSVITDLGNMVVDVSFPSGIQNPADLEKNINMIPGVVDNGIFSSVATIVLVVVRDRGNIKVMNLEEFLEGVPGHRDASSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	0	1
AT4G16070			Mono-/di-acylglycerol lipase, ...		Potri.010G005800 [exp]	4.47	0.6834
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	4.89	0.6860
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Potri.005G173100 [exp]	6.48	0.7342	SDG944,SDG37.1
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.019G130900 [exp]	7.21	0.6626	Pt-P68.1
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.006G015900 [exp]	16.49	0.7000
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	17.43	0.6850
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.008G119700 [exp]	18.49	0.6656
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206766 [exp]	21.44	0.5841
AT3G44510			alpha/beta-Hydrolases superfam...		Potri.009G164600 [exp]	23.49	0.5420
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	24.37	0.6536

Compare expression of checked genes

Potri.006G039700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.