Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26850 374 / 1e-128 F-box family protein (.1) AT2G32560 362 / 5e-124 F-box family protein (.1) AT2G41170 356 / 9e-122 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035900 [exp] 624 / 0 AT2G26850 389 / 2e-134 F-box family protein (.1) Potri.001G273900 [exp] 441 / 2e-154 AT2G26850 440 / 3e-154 F-box family protein (.1) Potri.009G068100 [exp] 436 / 1e-152 AT2G32560 444 / 1e-155 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036061 [exp] 379 / 2e-130 AT2G32560 445 / 3e-156 F-box family protein (.1) Lus10036444 [exp] 359 / 3e-122 AT2G26850 391 / 9e-135 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.006G040000.1 pacid=42770165 polypeptide=Potri.006G040000.1.p locus=Potri.006G040000 ID=Potri.006G040000.1.v4.1 annot-version=v4.1 ATGAGGAGTGAGGGGAGGATGTTGTCGTTGGGACCTCGGTTTTGGGGGGAGTTTTCTAGTTTTCTTGTTTCATGGTTCAATAAAGGAAGGTTTGTTGTTA GTTTGTTTCAAGTTCCTATGAAAATGCCACGGAAGAAGGTGAATCTTGGTTCAAGAGTTCAAGAGATTGTGGAGGAGGAGGAGGAGGAGGAGCCTTCTCT TCTGGATTTGCCTGAGTTGGCTTTGGAACGCATCCTCGAGAGGCTTTCACCTGCTGGATTGTGCAGCATGGCTGGAGTTTGTAGCTCTTTAAGGGATAGG TGTAGAAGTGATCACTTATGGGAGAAACACTTGAAGCAGAAATGGGGTAGAGTGATTGGTGAGTCTGCTTATAAGGAATGGCAATGGCATATAGCCTCAA GTAAGAGGCCGAGCCTTTTAGATAAAAGAAATCAAAAGGGTTTCATGGGATCTCTTATTAGTATGTGGCCTTTTTGTTGGTTTAAACCCAAGTGTGAAAG TAGAAGTAAGCCAACAACTTGTTTACCAGTTGATTCAATCATGGCTTTGTATCTCTCTCTTGAAAGTGGCAAGTTTTGGTTTCCAGCTCAGGTTTATAAC CGTGAGAACGGACATGTTGGATTTATGCTGTCATGTTATGATGCACAACTCAGCTATGATTCCAAGACAGACACCTTTCAGGCAAGGTATTCTCCTTTTG CGCGGCAAACAATAGAGCAAAGCATACACTGGGAAAGGCTAAGAGCACCACCAGTTGATACTCCTGCACATGTTCTTCATACTTCTGATTGTTTGAATGA CTTGAAACCCGGTGATCACATCGAGATCCAATGGAGGAGAAGCAAAGAATTCCCTTATGGTTGGTGGTATGCTGTTGTGGGGCATCAGGAATTATGTGAT GGGAATGAGAATCGATGCCGTTGTCGACACAACGATACAGTAGTGTTGGAGTTCAGGCAATACACTCCTGGATCTCGATGGAGACAGACGATAATAAACA GGAAGGACCACAGGGAAGTAGGAAACGAAGCTGATGGTTTTTATGGAGGAATTAGAAAGCTTTGCAAGGCTGAAGAAATCTCAAAATGGAAGCAGCTATG GCCGAACCAAATCGTCGATTAG
AA sequence Show only first row Show all	>Potri.006G040000.1 pacid=42770165 polypeptide=Potri.006G040000.1.p locus=Potri.006G040000 ID=Potri.006G040000.1.v4.1 annot-version=v4.1 MRSEGRMLSLGPRFWGEFSSFLVSWFNKGRFVVSLFQVPMKMPRKKVNLGSRVQEIVEEEEEEEPSLLDLPELALERILERLSPAGLCSMAGVCSSLRDR CRSDHLWEKHLKQKWGRVIGESAYKEWQWHIASSKRPSLLDKRNQKGFMGSLISMWPFCWFKPKCESRSKPTTCLPVDSIMALYLSLESGKFWFPAQVYN RENGHVGFMLSCYDAQLSYDSKTDTFQARYSPFARQTIEQSIHWERLRAPPVDTPAHVLHTSDCLNDLKPGDHIEIQWRRSKEFPYGWWYAVVGHQELCD GNENRCRCRHNDTVVLEFRQYTPGSRWRQTIINRKDHREVGNEADGFYGGIRKLCKAEEISKWKQLWPNQIVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26850			F-box family protein (.1)		Potri.006G040000 [exp]	0	1
AT3G05670			RING/U-box protein (.1)		Potri.005G021000 [exp]	3.74	0.7906
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.018G118143 [exp]	4.24	0.7690
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Potri.013G070400 [exp]	5.29	0.7552
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.003G196000 [exp]	10.95	0.7537
AT1G05690		BT3	BTB and TAZ domain protein 3 (...		Potri.007G140400 [exp]	11.74	0.7058
AT2G16940			Splicing factor, CC1-like (.1....		Potri.009G137200 [exp]	12.64	0.7876
AT1G56220			Dormancy/auxin associated fami...		Potri.013G014900 [exp]	15.19	0.7084
AT1G52540			Protein kinase superfamily pro...		Potri.003G032100 [exp]	16.70	0.7271
AT4G38960	CO		B-box type zinc finger family ...		Potri.004G162600 [exp]	17.94	0.7187
AT4G32295			unknown protein		Potri.018G027100 [exp]	21.81	0.7037

Compare expression of checked genes

Potri.006G040000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.