Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56740 432 / 2e-154 Ubiquitin-associated (UBA) protein (.1) AT2G41160 417 / 4e-148 Ubiquitin-associated (UBA) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035800 [exp] 483 / 1e-174 AT3G56740 380 / 7e-134 Ubiquitin-associated (UBA) protein (.1) Potri.006G197900 [exp] 42 / 0.0004 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038976 [exp] 457 / 8e-164 AT3G56740 421 / 1e-149 Ubiquitin-associated (UBA) protein (.1) Lus10027269 [exp] 438 / 2e-156 AT3G56740 420 / 2e-149 Ubiquitin-associated (UBA) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Potri.006G040100.1 pacid=42767860 polypeptide=Potri.006G040100.1.p locus=Potri.006G040100 ID=Potri.006G040100.1.v4.1 annot-version=v4.1 ATGAACGGCGGCCCATCTGGTTTCAACAATGCACCAGTTACAAGAATATGTGTTATTGCAAGCGCTATCTTTAGCGTTTTCTTGGGGATCAAAGGTGGCT CTAACAAGCTTGGATTATCGTATCAGGATATTTTCAGGAATCCACGTCTCTGGAAGTTAGTTTTGTCAGTTTTTGCCTTTTCATCTACACCAGAAATGAT GTTTGGGCTATATCTTCTTTACTACTTCAGGGTCTTTGAGAGACAGATTGGTTCCAACAAGTACTCTGTCTTTATTTTGTTCTCTGTGATAGTCTCTTTG CTCTTTGAGGTCTTTGCTGTCACACTCCTTCAAGATCCCTTAGCCAACCTTTTGACATCAGGACCTTATGGTCTTATATTTGCTTCATATGTTCCCTTCT ACTTTGACATTCCAGTATCAACTCGGTTTCGAGTCGTTGGAGTCCACCTTTCTGACAAGTCTTTCATATATCTAGCTGGTGTTCAGCTTCTTTTATCATC ATGGAAAAGATCAATTTTGCCTGGGATATGTGGTATCCTTGCTGGTTCCTTGTATCGTCTGAACCTCTTTGGCATCCGTAAGGCGAAGTTCCCTGAGTTC ATAGCTTCATTCTTCTCACGGCTTTCTTGGCCATCTACGGGCAGTCCGCGTGGAGCAACTTCTAGGAATGTAACAGGAAGTGCACCATCCTATGCTGGCC GTCATGTGCAGAGAACCTATCCTGCTCCCATGGCTCCTTCCACCGAGCCATCAGAGGATGCCATTGCTACTCTGGCTTCTATGGGTTTTGATAGGAACTC AGCTAGACAGGCACTTGTGCAGGCTAGGAATGATGTCAACACAGCTACAAACATCCTTCTTGAAGCACAGTCCCACTGA
AA sequence Show only first row Show all	>Potri.006G040100.1 pacid=42767860 polypeptide=Potri.006G040100.1.p locus=Potri.006G040100 ID=Potri.006G040100.1.v4.1 annot-version=v4.1 MNGGPSGFNNAPVTRICVIASAIFSVFLGIKGGSNKLGLSYQDIFRNPRLWKLVLSVFAFSSTPEMMFGLYLLYYFRVFERQIGSNKYSVFILFSVIVSL LFEVFAVTLLQDPLANLLTSGPYGLIFASYVPFYFDIPVSTRFRVVGVHLSDKSFIYLAGVQLLLSSWKRSILPGICGILAGSLYRLNLFGIRKAKFPEF IASFFSRLSWPSTGSPRGATSRNVTGSAPSYAGRHVQRTYPAPMAPSTEPSEDAIATLASMGFDRNSARQALVQARNDVNTATNILLEAQSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.006G040100 [exp]	0	1
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.019G051500 [exp]	3.46	0.6819
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Potri.015G041700 [exp]	4.47	0.7325	PP2.5
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	10.19	0.6853
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.013G020300 [exp]	10.24	0.6839	ATS9.2
AT2G29900		PS2	Presenilin-2 (.1)		Potri.015G058301 [exp]	14.73	0.6510
AT3G03330			NAD(P)-binding Rossmann-fold s...		Potri.013G084100 [exp]	16.15	0.6434
AT3G07910			unknown protein		Potri.001G277100 [exp]	18.76	0.6284
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	20.12	0.6780	RPT5.2
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.002G232500 [exp]	22.22	0.6254
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.004G018200 [exp]	26.11	0.6048

Compare expression of checked genes

Potri.006G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.