Plant FIBer expression Database

Potri.006G040400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56750 567 / 0 unknown protein
AT2G41150 560 / 0 unknown protein
AT4G12700 84 / 2e-17 unknown protein
AT2G04280 83 / 7e-17 unknown protein
AT4G08810 78 / 2e-15 SUB1 calcium ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G035600
[exp]
706 / 0 AT3G56750 549 / 0.0 unknown protein
Potri.001G005500
[exp]
83 / 6e-17 AT4G08810 762 / 0.0 calcium ion binding (.1)
Potri.014G170200
[exp]
77 / 6e-15 AT2G04280 862 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022403
[exp]
637 / 0 AT2G41150 560 / 0.0 unknown protein
Lus10018111
[exp]
626 / 0 AT2G41150 555 / 0.0 unknown protein
Lus10023250
[exp]
586 / 0 AT2G41150 547 / 0.0 unknown protein
Lus10008860
[exp]
583 / 0 AT2G41150 545 / 0.0 unknown protein
Lus10041091
[exp]
82 / 2e-16 AT2G04280 745 / 0.0 unknown protein
Lus10013761
[exp]
82 / 2e-16 AT4G08810 836 / 0.0 calcium ion binding (.1)
Lus10036415
[exp]
81 / 6e-16 AT2G04280 828 / 0.0 unknown protein
Lus10039176
[exp]
77 / 7e-15 AT4G08810 845 / 0.0 calcium ion binding (.1)
Lus10039175
[exp]
59 / 2e-09 AT4G08810 463 / 5e-163 calcium ion binding (.1)
PFAM info
Representative CDS sequence
>Potri.006G040400.2 pacid=42766945 polypeptide=Potri.006G040400.2.p locus=Potri.006G040400 ID=Potri.006G040400.2.v4.1 annot-version=v4.1
ATGGCAACCATAAACAAACCACTAAAGCCAAAACCTTTATCAAAGCTCAGATCCCCAATTCTCACTTTAATACTCTGCATTTCAGCCATTGCATTGTTAT
ACTTGTTTTTTTCACTAAATTCCACAGATGGGTTCTCCTTTTCATCTCCAAAATCCACAAGGAACTCTGTAGACAAACCCAAAAGACAACATACCATTCA
TGAAAAGTACTTGTATTGGGGTAATAGAATTGATTGTCCTGGTAAACATTGTGATTCTTGTGAAGGTTTGGGTCATCAAGAGTCTAGCCTTAGGTGTGCT
CTAGAAGAAGCCATGTTCTTGAATAGAACTTTTGTGATGCCTTCAAGGATGTGTATCAATCCAATACACAATAAGAAGGGGATCCTTCATCACTCTGACA
ATTCAAATTCAGAGGAAAGGTGGGCTGAAAGTTCTTGTTCCATGGACTCTTTGTATGATATGGATCTCATATCTGAAACTGTGCCTGTAATCTTAGACAA
CTCAAAAGATTGGTATCAGGTATTATCAACAAGTATGAAGTTGGGAGCTAGAGGAGTGGCCCATGTGGAAGGGATTAGTCGAGTTGATCTCAAAGAGAAT
AGTCACTACTCAAACCTCTTGCTCATTAATCGAACAGCGAGCCCACTTTCATGGTTCATGGAATGCAAAGACCGAAACAACCGTAGTGCTATAGCATTGC
CATATTCATTTCTTCCTACAATGGCAGCAGATAGATTAAGGGATGCTGCGGATAAGATTATGGCACTTCTTGGTGATTATGATTCCATCCATGTTCGTCG
AGGGGATAAAATAAAAACTAGGAATGACAGATTTGGGGTTTCTCGAACCCTACATCCTCATCTTGACAGGGATACCCGTCCAGAATTTATATTCCATAGG
ATTGAAAAATGGGTCCCACCTGGACGAACTCTTTTTATTGCTTCAAATGAGAAGACACCGGGATTTTTTTCAACTCTCGCTGTCAGATATAAATTGGCGT
ATTCATCTAACTACAGCATGATTCTGGATCCCGTGATTGAGAACAACTATGAATTATTTATGATTGAAAGGCTTATTCTGATGGGTGCCAAAACATTCAT
TAGAACATTCAAGGAAGATGATACTGATCTCAGCCTCACCGACGATCCAAAGAAGAATACCAAGTCATGGCAATTACCTGTTTATACCATGGATGAAGTA
GAGCAAGGAAGCTGA
AA sequence
>Potri.006G040400.2 pacid=42766945 polypeptide=Potri.006G040400.2.p locus=Potri.006G040400 ID=Potri.006G040400.2.v4.1 annot-version=v4.1
MATINKPLKPKPLSKLRSPILTLILCISAIALLYLFFSLNSTDGFSFSSPKSTRNSVDKPKRQHTIHEKYLYWGNRIDCPGKHCDSCEGLGHQESSLRCA
LEEAMFLNRTFVMPSRMCINPIHNKKGILHHSDNSNSEERWAESSCSMDSLYDMDLISETVPVILDNSKDWYQVLSTSMKLGARGVAHVEGISRVDLKEN
SHYSNLLLINRTASPLSWFMECKDRNNRSAIALPYSFLPTMAADRLRDAADKIMALLGDYDSIHVRRGDKIKTRNDRFGVSRTLHPHLDRDTRPEFIFHR
IEKWVPPGRTLFIASNEKTPGFFSTLAVRYKLAYSSNYSMILDPVIENNYELFMIERLILMGAKTFIRTFKEDDTDLSLTDDPKKNTKSWQLPVYTMDEV
EQGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56750 unknown protein Potri.006G040400
[exp]
0 1
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Potri.011G061300
[exp]
1.73 0.9253 Pt-RAB11.12
AT2G30890 Cytochrome b561/ferric reducta... Potri.002G057900
[exp]
2.44 0.9356
AT5G62710 Leucine-rich repeat protein ki... Potri.012G071100
[exp]
2.44 0.9288
AT5G42570 B-cell receptor-associated 31-... Potri.011G007200
[exp]
3.16 0.9169
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Potri.012G105500
[exp]
3.46 0.9202
AT2G34060 Peroxidase superfamily protein... Potri.011G062300
[exp]
3.60 0.9017
AT1G32190 alpha/beta-Hydrolases superfam... Potri.001G136400
[exp]
4.35 0.8991
AT3G59500 Integral membrane HRF1 family ... Potri.014G175900
[exp]
5.47 0.9009
AT1G16560 Per1-like family protein (.1.2... Potri.007G065800
[exp]
5.47 0.9037
AT2G45340 Leucine-rich repeat protein ki... Potri.002G147000
[exp]
6.92 0.9087

Potri.006G040400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.