Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10180 1334 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 432 / 2e-134 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G39050 323 / 1e-92 Kinesin motor family protein (.1) AT2G21380 316 / 3e-90 Kinesin motor family protein (.1) AT1G21730 308 / 7e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 310 / 9e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 305 / 5e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G66310 283 / 6e-79 ATP binding microtubule motor family protein (.1) AT2G21300 278 / 2e-78 ATP binding microtubule motor family protein (.1.2) AT3G51150 278 / 2e-77 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G013300 [exp] 440 / 5e-137 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G122100 [exp] 333 / 3e-96 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 328 / 3e-94 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.016G060400 [exp] 312 / 4e-89 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 312 / 2e-88 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G194900 [exp] 307 / 1e-87 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G027600 [exp] 294 / 1e-83 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 286 / 1e-80 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 286 / 2e-80 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012103 [exp] 1424 / 0 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 1313 / 0 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018661 [exp] 440 / 7e-137 AT1G59540 924 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007725 [exp] 439 / 1e-136 AT1G59540 906 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041958 [exp] 322 / 1e-92 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017969 [exp] 322 / 4e-92 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10015448 [exp] 295 / 5e-88 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10018145 [exp] 310 / 2e-87 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 309 / 3e-87 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005181 [exp] 290 / 3e-82 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.006G040700.1 pacid=42768679 polypeptide=Potri.006G040700.1.p locus=Potri.006G040700 ID=Potri.006G040700.1.v4.1 annot-version=v4.1 ATGGAGAGAATCCACGTCGCCGTCAGAGCAAGACCATTATCAGCAGAAGACGCAAAATCTACTCCATGGAGAATCTCCGGAAGCTCCATCTTCATCCCTA ATTACTCCAATAAATTCGAATTCGATCGTGTTTTTGGTGAAGCGTGTAAGACTGAAGAGGTTTATAGATCCAAAACTAAAGAAATCGTTACTGCTGCCGT TCGTGGATTCAACGGGACTGTATTTGCTTATGGACAAACTAACAGTGGAAAGACGCATACAATGAGAGGGACATCTAATGAGCCTGGCGTGATTCCTCTT GCTGTGCATGATTTGTTTCATATAATACAACGGGATGTGGACCGGGAGTTTCTGTTGAGAATGTCTTACATGGAGATATATAATGAAGATATTAATGACT TATTGGCTCCCGAACATCGAAAGTTGCAAATTCATGAAAGTACAGAGAGAGGAATATATGTAGCTGGATTGCGTGAAGAAATAGTTGCCTCTCCCCAACA AGTTCTCGAACTGATGCAGTTTGGAGAATCTCACAGGCACATTGGAGAGACAAACATGAACCTGTATAGTAGCAGGTCCCACACTATTTTCCGTATGATT ATTGAGAGTAGAGATAGGACTGGGGATGAGGATAGTAGCAACTCATGTGATGCTGTACGTGTATCGGTTTTGAATTTGGTGGACCTTGCTGGTTCTGAAC GGGCGGCAAAAACTGGAGCAGAAGGTGTTCGGCTCAAAGAGGGTTCACACATAAATAAAAGCTTAATGACACTTGGCACTGTCATTAAGAAATTGAGTGA GGGTGCAGAAAGCCAAGGGGGTCATGTTCCATATAGAGATAGCAAACTCACACGCATTTTGCAGCCCGCTTTGGGTGGAAATGCAAATACAGCTATAATA TGCAACATAACTCTTGCACAGATTCATGCAGACGAGACAAAGAGTAGTCTACTGTTTGCAAGCAGAGCGTTGCGTGTCACGAATTGTGCACATGTGAATG AGATTTTGACAGATGCTGCCTTGTTAAAGCGTCAAAAGAAAGAGATTGAGGAGCTTCGGGAAAAATTACGGGGTTCTCAATCCGAACACCTAGGAAAGGA GATTCTCAATCTTCGAAACACATTATTACAGTCTGAACTGGAGAGGGAGCGCATAGCTTTGGAATTGGAGGAGGAAAAGAGAGCTCAAGTTGAACGTGAG AAGGTTTTGCAAGAGCAAGCTAAGAGAATTAAAAACTTGAGTTCAATGGTGTTGTTCTCTAATCGGGATGAGAGTCGTGATCAACATAAGAGGGGGAAGA GACGAGACACATGGTGCCCTGGAAATCTTGCACGGGAAACTCTTCAAGAGGTGGATCCCAATATCCAGCCAAGGGCTTCTGCTATAAAACCAATGAAAGA TAGAAGTGATATGGGACCACTTTTACCCTTTCAAGAATTGGTCAGCGAGATTGAAGTTGGGGATGACGTCAATATGCAAAGTGAAGATTGTAAAAATAAT GCATCAGAAGACTGCACCCTTCCTGATCCATGTTCTTTATTGCATGTGACAAATAGGAGAAAGGCGCCACCTAGGAAGAAAGGCTCAACTGCGGAGGACC ATGAATGGGCAGAAATACAAGTGGAATATGAGGACTTGCTTCAGAAACTTGAAACTCAGAGAACTACGAGTGAGATACAGATTGATTGTTTAAGAAGACA GCTTGGTGAGACTAATTTGATTCAATGTGTGAAATGTAGTAATTGTCTTACTTCTGATGGCAATACAAGTACCAATAATTTGGACAAAAACGTAAGTCTA AGGGAGTCAGAGGCCATTATTGTGATCAAACAACTTCAAGATAAGATTAAAATGTTAGAAATGGAGAAGTCCTCTAGTCAGCAAAATCTAGACAGTGTTG TTGAGCTAGCAACAGAGCAAAGTATATGTGCTAGGGAGACGTTTGAAGAGCTCCATGAAGAGCTCCAAAATGCACGAGAGGAGACGAGGATTGCTCATGA ACAACTTAACATTATTGATGTTTCATTGGAGATTGAAGAAATCATGTCTGAAGTTAAGAACTCCAAAGAAGTTGTTGAAAGCTGTTCCTCTCTTTTGGAT GACGTTTTCCAGAGTTTTTCTTCTATATCTAATGCAATAAGTGATTTCAAGGCTTTGATCTGCCAGAGCTCTCATGAACAAGGATTAATCATTAGTAGTC ATGAGAAGTTATACCATTGCATGAAGCAAAAAGTTGATGAAGTGGAGAATGAAAAGCTCCTTTTACACAAAGAATCTACGGGTCTTCAGAAACAGATACA AGAACTGAGACACAATACTCAAAATTATGAAGAGTCTTTGAGAGCACTTACAGAACATCAGAATTTTGAAAAGGAGGAATTTCTTTCTCAAATTCAAAAT CTTCAAAAGGAATTATCATGTTTATCTTCTTGTTTCTTGGCAAAAGAAAAGGATAATTTGAGAAAAGATCTTGAGAAAACAAAAGTGAAATTGAAAGAGA CTGAATCCAAGCTCAAGAATGCTGTTCAAGAGAAAACCAAACTTGAGGGTCAAAAAACATTTGCTGAAAGGGAGGTAAAACGATTGCATGGTCAGAAGAC TCTTCTCGAGCGTGACATTAGCAAACGTGACTCCCTGGCTGGTAGAAGACGTGATTCAATGGTTGACAGGAGTTCAAAGATGTTTGACCCAAAAAAGTCA AAGGGTCTTGCAGCTTCTTTTGAAGAGACAATGGAGGAAGATTACAGAAAGTTGGAAGTTCTTGCATTTGAAATGGAAGCAACTATTGCTTCTTTGGAAG AGGAAGTAACTGCTGCACACAAGGAAAAGGAAGAGGCTATATCAAGAAATGAAAGTTTGGCTTCAGAGTTGGAGGCCCTGACAGAAAAGCTTAACATATC AAATGCTGAAGTGAATGTGTTGCAGGAAGATGCTTCACGCCTTAGACTAAGGTTGGAAGAATCCACTTTGGACCAGCAAAAATTGGAAAATTCTATAAGA TTGTTAGCAGAACAAAAGGAAGAGTTGGCAATGCAACTTAGTGATTCCCTTTTGGAAATGGAGGAGGAAAAGGCAATATGGTTTTCCAAGGAGAAAGCTT CCATTGAAGTCATAGAAGAAAAAGGTGCAGAGATTACAGCAATGACCAAAGCAATGTCAGAGGCCAGAAACGAATTAGAGTCCTGTAGGGAAGAATGCAA GGTCCTCACAGAAAAACTTGCATGTTCTGAGGAAAATGCCGAGCGGGAGAAGAAATCAAGTGCAGAGAAGTCTCTAGAGATTGATCAACTGAAAAATCAT CTGATAAGGGATGATATTGAGAGCAAACAATCTCAAGAGACGTTGAAATCAAATCTGGACACTCTCTCCATGGAACTTGACTGTGCTCGCGGGAAAGTGA ATACACTTGAGAAGGAAATGATTATTCTGAGCAAGGAGCGAGATGATCTATTTACTCAAATTAGAGGGTTGGATACAAGATTAGAACCAGAAAATGACTT CCAGAATCTTCAAAACCAACTACTCAGTATAACAAGTGAAAGGGACAAGTGGATTAGACATTGTGATGACATGTTACTGGAGTCTAAAGTTCAAGTTGAG GAACTTAATGGGAGAATCTCTAGCATGGAGGCCAAAATGAAGAATGAAGAAGCCATGAACAACAAGGAAAGGGCAAAATTTAGAATGAGGCTTCGAGGGA CACAAGCAAAGTCAGATGCCTTCCATTTTAGATACAAGGAAGCAGTAAATGAGTTGGCATTCATGAACAGAAACTACGAGGTGGCTTCAAAGAAGCTGAA GAACCAGTTAGCTTCCTATGGAATTGAGATCCTCAACCTCAAGAAGCAAATCGCTGCCTTAACCGGGCAAAGAACTGATCATTAA
AA sequence Show only first row Show all	>Potri.006G040700.1 pacid=42768679 polypeptide=Potri.006G040700.1.p locus=Potri.006G040700 ID=Potri.006G040700.1.v4.1 annot-version=v4.1 MERIHVAVRARPLSAEDAKSTPWRISGSSIFIPNYSNKFEFDRVFGEACKTEEVYRSKTKEIVTAAVRGFNGTVFAYGQTNSGKTHTMRGTSNEPGVIPL AVHDLFHIIQRDVDREFLLRMSYMEIYNEDINDLLAPEHRKLQIHESTERGIYVAGLREEIVASPQQVLELMQFGESHRHIGETNMNLYSSRSHTIFRMI IESRDRTGDEDSSNSCDAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGTVIKKLSEGAESQGGHVPYRDSKLTRILQPALGGNANTAII CNITLAQIHADETKSSLLFASRALRVTNCAHVNEILTDAALLKRQKKEIEELREKLRGSQSEHLGKEILNLRNTLLQSELERERIALELEEEKRAQVERE KVLQEQAKRIKNLSSMVLFSNRDESRDQHKRGKRRDTWCPGNLARETLQEVDPNIQPRASAIKPMKDRSDMGPLLPFQELVSEIEVGDDVNMQSEDCKNN ASEDCTLPDPCSLLHVTNRRKAPPRKKGSTAEDHEWAEIQVEYEDLLQKLETQRTTSEIQIDCLRRQLGETNLIQCVKCSNCLTSDGNTSTNNLDKNVSL RESEAIIVIKQLQDKIKMLEMEKSSSQQNLDSVVELATEQSICARETFEELHEELQNAREETRIAHEQLNIIDVSLEIEEIMSEVKNSKEVVESCSSLLD DVFQSFSSISNAISDFKALICQSSHEQGLIISSHEKLYHCMKQKVDEVENEKLLLHKESTGLQKQIQELRHNTQNYEESLRALTEHQNFEKEEFLSQIQN LQKELSCLSSCFLAKEKDNLRKDLEKTKVKLKETESKLKNAVQEKTKLEGQKTFAEREVKRLHGQKTLLERDISKRDSLAGRRRDSMVDRSSKMFDPKKS KGLAASFEETMEEDYRKLEVLAFEMEATIASLEEEVTAAHKEKEEAISRNESLASELEALTEKLNISNAEVNVLQEDASRLRLRLEESTLDQQKLENSIR LLAEQKEELAMQLSDSLLEMEEEKAIWFSKEKASIEVIEEKGAEITAMTKAMSEARNELESCREECKVLTEKLACSEENAEREKKSSAEKSLEIDQLKNH LIRDDIESKQSQETLKSNLDTLSMELDCARGKVNTLEKEMIILSKERDDLFTQIRGLDTRLEPENDFQNLQNQLLSITSERDKWIRHCDDMLLESKVQVE ELNGRISSMEAKMKNEEAMNNKERAKFRMRLRGTQAKSDAFHFRYKEAVNELAFMNRNYEVASKKLKNQLASYGIEILNLKKQIAALTGQRTDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10180			P-loop containing nucleoside t...		Potri.006G040700 [exp]	0	1
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.005G226700 [exp]	2.00	0.9306
					Potri.008G115533 [exp]	4.00	0.9282
AT1G32930			Galactosyltransferase family p...		Potri.001G450200 [exp]	5.65	0.9165
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Potri.003G060000 [exp]	7.93	0.9023
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	8.83	0.9166	ACO1
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.006G066900 [exp]	9.89	0.9151
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.006G101300 [exp]	12.24	0.8974
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.004G210600 [exp]	13.63	0.9163
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.002G160600 [exp]	15.87	0.8795
AT1G26090			P-loop containing nucleoside t...		Potri.008G115401 [exp]	16.12	0.8673

Compare expression of checked genes

Potri.006G040700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.