Plant FIBer expression Database

Potri.006G040800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41250 362 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
AT1G14310 182 / 2e-56 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
AT5G44730 43 / 0.0001 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G037600
[exp]
506 / 0 AT2G41250 371 / 2e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Potri.010G093900
[exp]
180 / 9e-56 AT1G14310 319 / 9e-111 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039005
[exp]
407 / 9e-145 AT2G41250 384 / 4e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10027299
[exp]
399 / 2e-141 AT2G41250 383 / 8e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10010452
[exp]
394 / 3e-139 AT2G41250 367 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10037187
[exp]
179 / 2e-55 AT1G14310 335 / 3e-117 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10036740
[exp]
177 / 1e-54 AT1G14310 343 / 2e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10015451
[exp]
48 / 3e-06 AT5G44730 417 / 1e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF13419 HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence
>Potri.006G040800.2 pacid=42770341 polypeptide=Potri.006G040800.2.p locus=Potri.006G040800 ID=Potri.006G040800.2.v4.1 annot-version=v4.1
ATGGCAACAGCAGGAACAAAACTAACAAGGGTTCTTTCAAGATTCTTCATCAATAATGTTAACAACAAACCTATGAGGGTAATGGGATCCGGGTCTTCTT
TTAATGGGTTGGCCAAGTATTCAACATCTGCATCTACAGCGGTGAAGGATTATGAGGATTATAGGAAGTCTTTATACGGTGATATTTCACATAGAGCTTT
GCTTGTTGATGCTGTTGGTACTCTTGTTGTTCCCTCACAGCCCATGGCTCAGATATATAGACAGATTGGGGAGAAGTATGGAGTGGAGTACTCTGAGGAT
GAGATATTAAACAGATACCGATGGGCTTATGGGCAGCCTTGGGGCCGATCTCGTCTCAGATATGTAAATGATGGGAGACCCTTCTGGCAGTTTATAGTCA
GTTCTTCCACTGGCTGCTCAGATGCTCGGTACTTTGAAGAGCTTTATAGCTACTATACCACTGAAAAGGCCTGGCACCTCTGTGATCCAGATGCCGAGAA
AGTGTTTGAGGCCATCAGAAAAGCGGGTGTAAAATTGGCTGTTGTGTCAAACTTTGACACTCGTCTTAGACCTCTCTTGCGGGCTTTAAACTGTGATCAC
TGGTTTGATGCCGTGGCAGTTTCAGCTGAAGTTGCAGCGGAGAAGCCAAATCCAACAATATTTCTAAAAGCTTGTGAGTTGTTGGAAGTAAAACCAGAAG
ATGTTGTGCATGTAGGCGATGATCGTAGGAATGATTTATGGGGTGCAAGGGATGCAGGCTGTGATGCTTGGCTTTGGGGAAGTGACGTCCACTCCTTCGA
GGAGGTTGCGCAGAGGATAGGAGTGCCTGTTTGA
AA sequence
>Potri.006G040800.2 pacid=42770341 polypeptide=Potri.006G040800.2.p locus=Potri.006G040800 ID=Potri.006G040800.2.v4.1 annot-version=v4.1
MATAGTKLTRVLSRFFINNVNNKPMRVMGSGSSFNGLAKYSTSASTAVKDYEDYRKSLYGDISHRALLVDAVGTLVVPSQPMAQIYRQIGEKYGVEYSED
EILNRYRWAYGQPWGRSRLRYVNDGRPFWQFIVSSSTGCSDARYFEELYSYYTTEKAWHLCDPDAEKVFEAIRKAGVKLAVVSNFDTRLRPLLRALNCDH
WFDAVAVSAEVAAEKPNPTIFLKACELLEVKPEDVVHVGDDRRNDLWGARDAGCDAWLWGSDVHSFEEVAQRIGVPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41250 Haloacid dehalogenase-like hyd... Potri.006G040800
[exp]
0 1
AT1G42960 unknown protein Potri.005G254200
[exp]
1.41 0.9508
AT5G41761 unknown protein Potri.003G136700
[exp]
2.82 0.9457
AT1G17100 SOUL heme-binding family prote... Potri.001G379000
[exp]
3.00 0.9454
AT1G04940 AtTic20-I, atTI... translocon at the inner envelo... Potri.002G031800
[exp]
4.00 0.9203
AT5G16710 DHAR3 dehydroascorbate reductase 1 (... Potri.017G125100
[exp]
4.47 0.9437
AT3G23760 unknown protein Potri.001G068800
[exp]
6.00 0.9117
AT4G24660 ZF_HD ATHB22, MEE68, ... ZINC FINGER HOMEODOMAIN 2, MAT... Potri.012G040900
[exp]
11.00 0.9120
AT5G17870 PSRP6 plastid-specific 50S ribosomal... Potri.002G112500
[exp]
11.40 0.9417
Potri.001G394900
[exp]
13.03 0.9102
Potri.005G206901
[exp]
14.49 0.9000

Potri.006G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.