Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10220 388 / 3e-138 EMB2804 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) AT1G71440 43 / 0.0001 TFCE, PFI TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072700 [exp] 54 / 3e-08 AT1G71440 646 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026266 [exp] 410 / 6e-147 AT3G10220 378 / 2e-134 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Lus10042405 [exp] 405 / 5e-145 AT3G10220 376 / 2e-133 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Lus10003518 [exp] 56 / 7e-09 AT1G71440 637 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) Lus10002949 [exp] 54 / 2e-08 AT1G71440 503 / 2e-176 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [poplar] [flax] SH3 PF01302 [poplar] [flax] CAP_GLY CAP-Gly domain CL0072 [poplar] [flax] Ubiquitin PF14560 [poplar] [flax] Ubiquitin_2 Ubiquitin-like domain
Representative CDS sequence Show only first row Show all	>Potri.006G041400.1 pacid=42768472 polypeptide=Potri.006G041400.1.p locus=Potri.006G041400 ID=Potri.006G041400.1.v4.1 annot-version=v4.1 ATGGCATCATCTCGCTTCCAGATTCAACCTGACGAGGCAGTCCTCTTACGAGTCACTCACTCCAATATCAAGTCTTTCTCTGCTGAAATTCGCTTCTCAC TTCAGTCTTCAGTGGAAGCTGTTAAAGATAAGCTATGGAGAAAATGTGGGACTTCAGTGAATTCAATGCAACTTGAGCTTTATGATGATGCAAACTCAAA AGTCTCTAATTTAACTGATGATTCTAGACCTCTTGGTTTCTACTCTCCTTTTGATGGGTATCGGTTGCATATAATAGATCTGGATCCTTCATCAGTAACA GCTGGTGGGTGGCTGGAAGATATTTCATCGGTGGAGAAATATTCAATTTCTGAAGAAGCTTATGATAAACGTGATGGCACTTTTAGAAAATTTAAAGAAA AAATGGCAGCCCAAAATCCATCAGCTTTTGCGCCTAAGATAACAGATGACTACATGGAAGACCTGTGTGCAAATATCAAGGTGGGTGATAGATGTGAAAT TGATCCAGGGGAGAAAAGAGGGGTTGTCAAATATGTTGGTCGAGCGGAATCTCTCGCACCAGGTTTTTGGGTAGGAGTTCAGTTCGACGAACCATTCGGA AAACATGATGGCATGGTAAAAGGAGTGCGCTACTTTGACTCTCCTCCACTTCATGGTGCTATGATTAGGCCAGACAAAGTAAAGGTTGGTGACTATCCAG AAAGAGATCCTTTCGAAGAGGAAGAAATATAA
AA sequence Show only first row Show all	>Potri.006G041400.1 pacid=42768472 polypeptide=Potri.006G041400.1.p locus=Potri.006G041400 ID=Potri.006G041400.1.v4.1 annot-version=v4.1 MASSRFQIQPDEAVLLRVTHSNIKSFSAEIRFSLQSSVEAVKDKLWRKCGTSVNSMQLELYDDANSKVSNLTDDSRPLGFYSPFDGYRLHIIDLDPSSVT AGGWLEDISSVEKYSISEEAYDKRDGTFRKFKEKMAAQNPSAFAPKITDDYMEDLCANIKVGDRCEIDPGEKRGVVKYVGRAESLAPGFWVGVQFDEPFG KHDGMVKGVRYFDSPPLHGAMIRPDKVKVGDYPERDPFEEEEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	0	1
AT2G18990		TXND9	thioredoxin domain-containing ...		Potri.009G092700 [exp]	1.00	0.9518
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Potri.003G095400 [exp]	3.46	0.9329
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.009G031200 [exp]	3.74	0.9433
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079300 [exp]	4.79	0.9252	CAS.3
AT5G65020		ANNAT2	annexin 2 (.1.2)		Potri.005G075900 [exp]	5.09	0.9320	ANN1.3
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.013G123600 [exp]	5.74	0.9409	Pt-RAB11.8
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Potri.001G222200 [exp]	8.48	0.9366	Pt-ACCAL.3
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Potri.005G033400 [exp]	8.60	0.9150	Pt-ANP1.2
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.002G181300 [exp]	8.94	0.9369
AT3G16060			ATP binding microtubule motor ...		Potri.003G053800 [exp]	9.89	0.9314

Compare expression of checked genes

Potri.006G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.