Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57060 1904 / 0 binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039013 [exp] 1866 / 0 AT3G57060 1797 / 0.0 binding (.1.2) Lus10027308 [exp] 1032 / 0 AT3G57060 990 / 0.0 binding (.1.2) Lus10039012 [exp] 296 / 2e-90 AT3G57060 299 / 8e-92 binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12717 [poplar] [flax] Cnd1 non-SMC mitotic condensation complex subunit 1 CL0020 [poplar] [flax] PF12922 [poplar] [flax] Cnd1_N non-SMC mitotic condensation complex subunit 1, N-term
Representative CDS sequence Show only first row Show all	>Potri.006G041500.1 pacid=42770089 polypeptide=Potri.006G041500.1.p locus=Potri.006G041500 ID=Potri.006G041500.1.v4.1 annot-version=v4.1 ATGGCTCCTTATTTTGTGTTTCCACAAAATCTAAAATCCTTAGAAGAAGAAAACGAAGACAATCGTCTCCACGTTCTGAACCCAACCGACGTCGCTTCTC TCCGTCTTCCTGAACTCGAAGAATTTGTCAAAGGAGTATCCTTTGATTTGTCGGATAAAGAGATATTCTGCATTGAGGAGCAAGAAGTGTTTGATCACGT ATATTCGTTAGTTAAAGGGTTTTCTAGTCTAACTCCATCCGGTAAAGTCAATCTTGTGGAGAGTCTTCGGTCGAATCTAAGTGTTTTGCTCCCAAATGTG GATTCTCTCTTGCGCGTTTTTCAAGGTCAGGATGATGATAATGACAATGGGAATGAGACTCCTCCGGTGCTTGATCGAGTTTCTTCTTATCGAAATGCTC TTAAAATTTACACATTTTTCCTCGTCAGTATTGTTCTGTCTGAGGAGTCAAGTGCTAGTTCAAATAACAAAACTAAGATGACAGGGCCTAATAGGAAGAA ACAGTCGGTACATTCATGGAATTGGGAACCACAGAGGGGCCGGATACTTAATTTGATTGCTAATTCACTAGAGATCAACCTTGCGTTGCTCTTTGGATCG ACAGACCCTGATGAAAATTATCTTTCTTTTATTACAAAAAATGCATTTGGTTTGTTTGAGAATGCAACACTTATAAAGGACTCTGAGACAAAAGATGCTC TTTGCCGAATAATTGGGGCTTGTGCTACGAAATACCACTATACAGCACAGTCATGTGCTTCAATCATGCACCTAGTTCACAAATATGACTATGTTGTTAC CCACATGGCTGATGCGGTTGCTGGGGCTGAGAAGAAGTATGCTGATGGCACCCTTGCCAGTTCTTTGATCAGAGAGGTTGGGAGGACTAATCCAAAAGCT TATGTGAAAGACACTGTTGGGGCTGAAAATGTTGGGCGTTTTCTTGTAGAGCTTGCTGATCGGCTACCAAAGTTGATTTCAACTAACATTGGGGTCTTGG TCCCACATTTTGGAGGAGAATCTTATAAGATAAGGAATGCTCTTGTTGCTGTTCTGGGGAAGTTGGTGGCAAAGGCATTTAAGGATGTTGAGGGTGATGT CAGTTCTAAATCTGTTCGTCTCCGCACAAAGCAAGCCATGTTGGAAATCTTGCTTGAGCGCTGCCGAGATGTTTCTGCTTATACCAGGAGTCGGGTTCTT CAAGTTTGGGCTGAACTATGTGAAGAGCATTCTGTTTCAATTGGTCTGTGGAATGAGGTTGCTGCAGTTGCTGCTGGGAGATTGGAGGATAAATCTGCAA TAGTTAGAAAAGCTGCATTAAATTTGCTTATCATGATGCTGCAGCATAACCCTTTTGGCCCCCAGCTTCGAATAGCTTCATTTCAAGCAACATTAGAACA ATACAATAAGAAGTTGAATGAGCTTGAACCAGATAAAAGTGCAGAAAGTGTTTTGGATGGATTGCAATCTGATAATGAGACCTATGATGGAGGTGAGGTG GATGATGTGAATATGGAAGAACCAGTTAAGGAACAGCAGGAGAGTTTAACTGACAGTGTGCCTAATCTGGAAGAAGGGATTCCTCATAAGGATAGCTCAG TGCCAGATATTGGGAATTTGGAGCAAACCAGGGCTTTGGTTGCATCTCTGGAGGCTGGCTTGATATTTTCTAAGTGCGTATCTGCCACAATGCCTACGCT TGTCCAGTTGATGGCTTCATCTTCAGCCACAGATGTTGAGAACACTATTTTGTTGCTGATGAGGTGCAAACAGTTCCAAATTGATGGTGCCGAGGCTTGC CTCCGTAAGATGTTGCCATTGGTATTCTCTCAGGATAAATCCATCTATGAAGCTGTGGAGAATGCCTTCATTACAATTTATGTCCGGAAAAATCCATTAG ATACTGCTAAGAATCTTTTGGATCTTGCCATAGATTCAAATATAGGAGATCTTGCGGCTCTGGAATTTATTGTCAATGCACTGGTTTCCAAAGGTGATAT CTCCACAAGCACAATATCAGCATTATGGGATTTCTTTTGCTTTAACATTAGTGGTACAACTCCAGAGCAAAGTCGTGGAGCTTTATCAGTGCTTTGCATG GCTGCAAAAGCGTCCCCTGGAGTTCTTGGCTCACACTTGCAAGATATTATTGATATTGGCTTTGGCCGTTGGGCTAAAGTGGACCCTTTGCTTGCCAGGA CAGCATGCATTGCCATTCAGAGATTGTCAGAAGAGGACAAGAAAAAGCTGTTGGCTAGTAATGGTAGCCGTGTGTTTGGTTTCTTAGAGAACTTGATTAG TGGCTCTTGGCTTCCAGAAAACACATGGTATGCTGCTGCTGATAAAGCAATAGGTGTCATATATGCAATTCATCCCACTCCGGAAACCCTAGCTGCTGAC CTTGTAAAGAAGTCTCTTAGTTCTGTTTTCATTTGTAGTGGAGGAGATGACTTGCAGAATGATATTGAAAGTGGCAGCGCTGATATTCTTACAACAGTTC AAGTAGCAAAAATTAGTAGATATTTATTTGTCACAAGTCATGTTGCCATGAATCAGTTACTATACATAGAAACCTGTGTTCGGAAGATCCAAAAACAGAA GCTGAAGAGGGATAAATTGGGAGCTGATGGACAGAATGGTCATAATAATGGTATAAAACAAGATGATACACCAAAGGATAACATCAATGCGGAGCTAGGT GTTTCTGCCTCTGAAGATGCAATTCTGGATACACTCTCTGAGAGAGCAGAGAAAGAGATTGTTGCTGGTGGTTCCAAAGAGAAATATTTGATAGGGCTTT GTGCACCTTTCCTGTCGAAGCTTTGTAGAAATTTTAGTTTGATGCAAAAGTATCCTGAACTACAGGCATCTGGAATGCTTGCTCTTTGTCGATTTATGAT TATTGATCCAGATTTTTGTGATGCAAATCTCCAGCTTCTCTTCACAGTTGTGGAAAGTGCACCATCAGAAACTGTTCGTTCAAACTGCACTATTGCTCTT GGAGATTTGGCAGTTCGGTTTCCTAATCTGTTAGAACCATGGACTGAAAACATGTATGCTCGGTTACGAGATCCTTCGGTTTCTGTTAGGAAAAATGCTG TGCTGGTGCTTTCACATCTCATATTAAATGATATGATGAAGGTTAAAGGTTATATAAATGAGATGGCTATAAGATTAGAAGATGAACAGGAGAGGATTTC AAATCTCGCTAAACTTTTCTTTCATGAGCTGTCAAAGAAAGGAAGCAATCCTATATATAACTTACTTCCAGATATACTTGGCAAATTATCCAACCAGGAG CTGAAAAGGGAGACTTTCTGCAACATCATGCAGTTTTTAATTGGGTCCATTAAAAAGGACAAACAAATGGAGTCTCTTGTTGAAAAGCTTTGCAACAGGT TCAGTGGAGTGATAGATACTAGGCAGTGGGAATACATCTCGTATTGCCTCTCCCAGCTGGCATTTACTGAAAAGGGAATGAAAAAACTCATTGATTCATT TAAGACGTTTGAACATGTCCTGTCTGAGGATTCTGTCATGGACAATTTTAAAAGCATAATCATTAAGGCTAAGAAGTTTGCAAAACCAGAACTTAAATTA TGCATTGAGGAATTTGAGGAGAAGCTTACTAAGTTCCACATGGAAAAGAAAGAACAGGAAGTGACAGCAAGAAATGCCCAAATTCATCAGCAGAAAATCG GTGGCATGGAAGGTTGTGCGGTGGCTAGAAATGAAGGAGAAGTGAGTGAAGAATCAGATGTTTTTGAAGATGGTGAAATCGATGATCCATCCATGGAAGA AATGGTTCAATCATCGGATTCTGAGGTCAACAGGTCAGGTGAATATTCAGGTACTTCAAGTGAGGTGACAGGCATGGAGTCAGATGGCACTGAAGTGCAG TCAAAAGTGGCCTCCAAATCTAGAGCTACGGAAAGCAAAGTGAAGGGTGAGAGTGGTGATATTTCTGCATCATCTAGAAGATCCACCAGGTCAAAGCAAA GATAG
AA sequence Show only first row Show all	>Potri.006G041500.1 pacid=42770089 polypeptide=Potri.006G041500.1.p locus=Potri.006G041500 ID=Potri.006G041500.1.v4.1 annot-version=v4.1 MAPYFVFPQNLKSLEEENEDNRLHVLNPTDVASLRLPELEEFVKGVSFDLSDKEIFCIEEQEVFDHVYSLVKGFSSLTPSGKVNLVESLRSNLSVLLPNV DSLLRVFQGQDDDNDNGNETPPVLDRVSSYRNALKIYTFFLVSIVLSEESSASSNNKTKMTGPNRKKQSVHSWNWEPQRGRILNLIANSLEINLALLFGS TDPDENYLSFITKNAFGLFENATLIKDSETKDALCRIIGACATKYHYTAQSCASIMHLVHKYDYVVTHMADAVAGAEKKYADGTLASSLIREVGRTNPKA YVKDTVGAENVGRFLVELADRLPKLISTNIGVLVPHFGGESYKIRNALVAVLGKLVAKAFKDVEGDVSSKSVRLRTKQAMLEILLERCRDVSAYTRSRVL QVWAELCEEHSVSIGLWNEVAAVAAGRLEDKSAIVRKAALNLLIMMLQHNPFGPQLRIASFQATLEQYNKKLNELEPDKSAESVLDGLQSDNETYDGGEV DDVNMEEPVKEQQESLTDSVPNLEEGIPHKDSSVPDIGNLEQTRALVASLEAGLIFSKCVSATMPTLVQLMASSSATDVENTILLLMRCKQFQIDGAEAC LRKMLPLVFSQDKSIYEAVENAFITIYVRKNPLDTAKNLLDLAIDSNIGDLAALEFIVNALVSKGDISTSTISALWDFFCFNISGTTPEQSRGALSVLCM AAKASPGVLGSHLQDIIDIGFGRWAKVDPLLARTACIAIQRLSEEDKKKLLASNGSRVFGFLENLISGSWLPENTWYAAADKAIGVIYAIHPTPETLAAD LVKKSLSSVFICSGGDDLQNDIESGSADILTTVQVAKISRYLFVTSHVAMNQLLYIETCVRKIQKQKLKRDKLGADGQNGHNNGIKQDDTPKDNINAELG VSASEDAILDTLSERAEKEIVAGGSKEKYLIGLCAPFLSKLCRNFSLMQKYPELQASGMLALCRFMIIDPDFCDANLQLLFTVVESAPSETVRSNCTIAL GDLAVRFPNLLEPWTENMYARLRDPSVSVRKNAVLVLSHLILNDMMKVKGYINEMAIRLEDEQERISNLAKLFFHELSKKGSNPIYNLLPDILGKLSNQE LKRETFCNIMQFLIGSIKKDKQMESLVEKLCNRFSGVIDTRQWEYISYCLSQLAFTEKGMKKLIDSFKTFEHVLSEDSVMDNFKSIIIKAKKFAKPELKL CIEEFEEKLTKFHMEKKEQEVTARNAQIHQQKIGGMEGCAVARNEGEVSEESDVFEDGEIDDPSMEEMVQSSDSEVNRSGEYSGTSSEVTGMESDGTEVQ SKVASKSRATESKVKGESGDISASSRRSTRSKQR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	0	1
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	1.41	0.9637
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	2.64	0.9374
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.006G251200 [exp]	3.46	0.9340	Pt-CPP1.22
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	3.46	0.9503
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	3.74	0.9332	CPE902,Pt-SMC2.2
AT4G23740			Leucine-rich repeat protein ki...		Potri.001G095200 [exp]	4.47	0.9223
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	5.00	0.9398
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	5.09	0.9338
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.001G147500 [exp]	7.21	0.8992
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	7.34	0.9368	Pt-RANGAP1.1

Compare expression of checked genes

Potri.006G041500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.