Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) AT2G41330 336 / 7e-113 Glutaredoxin family protein (.1) AT5G13810 211 / 6e-66 Glutaredoxin family protein (.1) AT5G39865 163 / 3e-46 Glutaredoxin family protein (.1) AT3G28850 154 / 2e-42 Glutaredoxin family protein (.1) AT5G03870 150 / 2e-41 Glutaredoxin family protein (.1) AT5G58530 145 / 2e-40 Glutaredoxin family protein (.1) AT1G64500 140 / 7e-38 Glutaredoxin family protein (.1) AT5G06470 132 / 5e-36 Glutaredoxin family protein (.1) AT4G10630 128 / 1e-33 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G038600 [exp] 677 / 0 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 228 / 2e-72 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 224 / 3e-71 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 224 / 3e-71 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.017G081600 [exp] 172 / 8e-49 AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 164 / 3e-48 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 162 / 4e-47 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 162 / 1e-45 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.008G072200 [exp] 156 / 3e-45 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018025 [exp] 276 / 1e-89 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1) Lus10042021 [exp] 254 / 2e-81 AT3G57070 252 / 2e-80 Glutaredoxin family protein (.1) Lus10039537 [exp] 223 / 6e-70 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 222 / 1e-69 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10007256 [exp] 178 / 2e-51 AT5G39865 358 / 1e-121 Glutaredoxin family protein (.1) Lus10001669 [exp] 174 / 9e-51 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10017335 [exp] 157 / 2e-44 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10040949 [exp] 150 / 6e-43 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10017029 [exp] 152 / 2e-41 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10021353 [exp] 151 / 3e-41 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Potri.006G041800.1 pacid=42767293 polypeptide=Potri.006G041800.1.p locus=Potri.006G041800 ID=Potri.006G041800.1.v4.1 annot-version=v4.1 ATGGGCTGTTCTGCTTCAAGACCAAATACCCTCCTCACAAAGAATCACCATCCTGAAGAGACCTTATCTTATGCTTCTCCTTCTAAAGATAACTCCATGT TTTCTCCACAGTATTCTTCACCAACTGTCCCTAGAGCTCTCTCTCTTCAAACCCCGTTAGTCCACCACCCACCTTCAAGAAAAGGTGACTCTCATCACCT GGTGTCTCTAACTTCCACCACTTATGGCTCTCTTGTCCTCATTGACCCCAACGTGAACACCCAAAAATCCTTTGATCAGCCACAACCACCAAGAAAATCT ACCAAAAAGACACATAAAACACAAAATAATCAAGACCCTTGTGAGTCTCTATCCCCTGACTCTGTCATTAACACTTGGGAGCTCATGGATGGTCTTGACG AGAATGATGAGCTTGAATTTGAAATGAACAACTCTTTTAAGCCAAGATCTTCACTTTCTGGTCATTCTATTGAGTTCGTCTCCAAAGTTAGTTCTTTTCA TCATCCGGGTTCTGATAAGTTTGTTAAAAAGCTGCATGATTCTTTTGACTCACTGAAGTTTGAAGAAATAGTTGCTGAAAAGCCTGTTTCATTGTCAAAG CCATTATGGAAGCATTTGTCTGAGGAATCATTGCTTTCAAAGATGGATCCTAATGTGGCTTCAAGTTATATGCGTGCATTGTCATCAAGGCAATTGGGGT GTAACAAAGAGTCCAAGGATGCAACACCAGTGAATTCTAGTTCCATGAGTGATACTTTATCAAGTAAAACGGGTCCCTTTTTGAATGATAAAGATGGAAA AATTGTTCTGTATTTTACAAGTTTGAGAGGAATCAGAAAGACTTATGAGGATTGTTGTGCAGTTAGAATGATATTCAGAGGTTTCAGAGTTGCAGTTGAT GAAAGAGATATTTCAATGGATTCCACATATAGAAAGGAGCTGCAAAGTTTGCTTAAAGGGAAAGCAATGATCTTGCCACAAGTTTTTGTTAGAGGAAATC ATATTGGCGGTGTGGAGGAAATCAGGCAGCTAAATGAAGCTGGTGAATTGGCAAAGCTGTTCGAAGGTTTTCCTGTTCAAGATCCAAGGTTGGTTTGCGA GGGTTGTGGGGACGCAAGGTTTGTGCCATGTCCAAATTGTAATGGAAGTAGAAAAGTGTTTGATGAAGAAGAAGAGCAACTGAGAAGGTGCGCAGATTGC AATGAGAATGGCTTGATTCGTTGCCCTGGTTGCTGCTCATAG
AA sequence Show only first row Show all	>Potri.006G041800.1 pacid=42767293 polypeptide=Potri.006G041800.1.p locus=Potri.006G041800 ID=Potri.006G041800.1.v4.1 annot-version=v4.1 MGCSASRPNTLLTKNHHPEETLSYASPSKDNSMFSPQYSSPTVPRALSLQTPLVHHPPSRKGDSHHLVSLTSTTYGSLVLIDPNVNTQKSFDQPQPPRKS TKKTHKTQNNQDPCESLSPDSVINTWELMDGLDENDELEFEMNNSFKPRSSLSGHSIEFVSKVSSFHHPGSDKFVKKLHDSFDSLKFEEIVAEKPVSLSK PLWKHLSEESLLSKMDPNVASSYMRALSSRQLGCNKESKDATPVNSSSMSDTLSSKTGPFLNDKDGKIVLYFTSLRGIRKTYEDCCAVRMIFRGFRVAVD ERDISMDSTYRKELQSLLKGKAMILPQVFVRGNHIGGVEEIRQLNEAGELAKLFEGFPVQDPRLVCEGCGDARFVPCPNCNGSRKVFDEEEEQLRRCADC NENGLIRCPGCCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57070			Glutaredoxin family protein (....		Potri.006G041800 [exp]	0	1
AT1G12500			Nucleotide-sugar transporter f...		Potri.003G118000 [exp]	9.94	0.8547
AT1G12460			Leucine-rich repeat protein ki...		Potri.001G114500 [exp]	11.40	0.8427
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.014G125000 [exp]	13.41	0.8172
AT1G48850		EMB1144	embryo defective 1144, chorism...		Potri.010G221600 [exp]	23.43	0.8281
AT3G52500			Eukaryotic aspartyl protease f...		Potri.006G204700 [exp]	30.98	0.8060
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Potri.011G109700 [exp]	44.00	0.7687
AT1G11860			Glycine cleavage T-protein fam...		Potri.004G009600 [exp]	50.29	0.8029	GDCST.2
AT2G46710			Rho GTPase activating protein ...		Potri.014G103600 [exp]	68.64	0.7976
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Potri.009G003100 [exp]	77.07	0.7683
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.014G040300 [exp]	80.96	0.7954

Compare expression of checked genes

Potri.006G041800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.