Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57090 215 / 3e-72 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12390 164 / 4e-52 FIS1B FISSION 1B, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G41360 0 / 1 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G038900 [exp] 268 / 3e-93 AT3G57090 216 / 1e-72 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G047300 [exp] 205 / 1e-68 AT3G57090 203 / 9e-68 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009706 [exp] 214 / 1e-71 AT3G57090 237 / 6e-81 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036023 [exp] 198 / 4e-65 AT3G57090 223 / 1e-74 FISSION 1A, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009707 [exp] 101 / 8e-29 AT5G12390 96 / 6e-27 FISSION 1B, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF14852 [poplar] [flax] Fis1_TPR_N Fis1 N-terminal tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF14853 [poplar] [flax] Fis1_TPR_C Fis1 C-terminal tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.006G041900.1 pacid=42770105 polypeptide=Potri.006G041900.1.p locus=Potri.006G041900 ID=Potri.006G041900.1.v4.1 annot-version=v4.1 ATGGAAGCGAAGATCAGAGGGGCCTTCGAGTCCGTCGGTTCCTTCTTCACCGGCGGCGATCATATCCCATGGTGCGACCGTGACATAATTACTGGCTGTG AGAGGGAGGTTGCAGAAGCTGCTGAGGGTGACTCAGAGGAACTTAAAAGGGATACCATAATGCGATTGTCATGGGCTCTTGTTCACTCTAAACAACCAGA AGATGTGCAGCGTGGGATAGCTATGCTTGAAGCATCATTGGCAAATAGTAGCCCCCCTTTGCTACAGAGAGAGAAGATTTATCTTCTGGCCGTGGGATAT TACAGAAGTGGTGAATATTCAAGGAGCAGGCAGCTGGTGGACCAGTGTTTGGAGATTGCACCTGATTGGAGGCAGGCTTTGGTCCTGAAGAAGACACTTG AAGATCGAGTTGCTAAAGATGGTGTTATTGGAATAGGCATCGCTGCTACTGCCGTGGGACTGATAGCTGGTGGAATTGCTGCAGCATTGGCTCGCAAGAA ATGA
AA sequence Show only first row Show all	>Potri.006G041900.1 pacid=42770105 polypeptide=Potri.006G041900.1.p locus=Potri.006G041900 ID=Potri.006G041900.1.v4.1 annot-version=v4.1 MEAKIRGAFESVGSFFTGGDHIPWCDRDIITGCEREVAEAAEGDSEELKRDTIMRLSWALVHSKQPEDVQRGIAMLEASLANSSPPLLQREKIYLLAVGY YRSGEYSRSRQLVDQCLEIAPDWRQALVLKKTLEDRVAKDGVIGIGIAATAVGLIAGGIAAALARKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.006G041900 [exp]	0	1
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078000 [exp]	2.23	0.8470
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Potri.002G126200 [exp]	6.48	0.7811
AT4G21580			oxidoreductase, zinc-binding d...		Potri.004G036100 [exp]	9.16	0.8093
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.011G168200 [exp]	10.58	0.8352	UBC.8
AT5G64830			programmed cell death 2 C-term...		Potri.007G080500 [exp]	19.89	0.7658
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076600 [exp]	22.80	0.8202	Pt-CYP89.2
AT5G58800			Quinone reductase family prote...		Potri.009G044400 [exp]	30.09	0.8110
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G011300 [exp]	34.20	0.7496
AT4G16745			Exostosin family protein (.1.2...		Potri.003G079000 [exp]	49.04	0.7564
					Potri.006G102900 [exp]	51.96	0.7966

Compare expression of checked genes

Potri.006G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.