Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41380 342 / 2e-119 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G10830 172 / 9e-53 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G22530 171 / 3e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G54150 170 / 4e-51 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G61210 166 / 2e-50 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G55450 159 / 5e-47 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G039051 [exp] 410 / 8e-147 AT2G41380 272 / 2e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103200 [exp] 195 / 1e-61 AT5G10830 376 / 5e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G101800 [exp] 191 / 3e-60 AT4G22530 331 / 3e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103400 [exp] 183 / 6e-57 AT4G22530 317 / 1e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G066200 [exp] 181 / 2e-56 AT5G10830 339 / 2e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G067500 [exp] 177 / 1e-54 AT5G10830 326 / 3e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001155 [exp] 392 / 3e-139 AT2G41380 330 / 1e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024476 [exp] 197 / 1e-62 AT5G10830 370 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10002994 [exp] 191 / 3e-60 AT5G10830 365 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.006G042200.1 pacid=42767136 polypeptide=Potri.006G042200.1.p locus=Potri.006G042200 ID=Potri.006G042200.1.v4.1 annot-version=v4.1 ATGGCAGAATTGTTCGTTGAGCAAGCAAAACAATATGCAGAGACAAGGCCAAGTTATCCACAAGAATTGTTCGAATTCATTGCCTCAAAAACACCCTCTC GTGACCTTGTATGGGATGTTGGCACTGGAAGTGGACAAGCTGCTCGATCTCTAGCTGGGATTTACAAGAATGTAATAGGCACAGACACGAGCCTAAAACA ACTAGAATTTGCACCAAAACTTCCCAATGTGAGATACCAACAGACTCCTCCTGTGATGTCAATGGGTGAGCTTGAACAGACTGTGTCAACACAATCTAGT GTTGATCTAGTGACTATTGCCCAAGCCATGCATTGGTTTGATCTTCCTTCATTTTACCAACAAGTAAAATGGGTGCTCAAAAAACCTCATGGAGTCATTG CTGCTTGGTGCTACACAATTCCTGAAGTCAATGACTCTGTAGACTCGGTCTTCAATCCATTTTACTCCATTGATTCTGATCCTTATTGGGAACCGCAGCG TAAATTGGTCGACAACAAGTATATGAGCATCGATTTTCCATTTGAACCAGTTGAAGGAACTGACAATACCGGACCATTCAAGTTTGTAACAGAGAAGATG ATGGATTTAGATGAGTATTTTACGTACATAAGGTCATGGTCTGCATATCAAACAGCTAAGGCAAAGGGTGTGGAGCTACTGAGAGATGATGTGATTGAAA GTTTCAAGCGTGCCTGGAATGAAGATGGGCATGGCCAAAAAGTTGTCAAGTTTCCTGTTCACCTGAAGATTGGCAAGGTGGGAAACGTATGA
AA sequence Show only first row Show all	>Potri.006G042200.1 pacid=42767136 polypeptide=Potri.006G042200.1.p locus=Potri.006G042200 ID=Potri.006G042200.1.v4.1 annot-version=v4.1 MAELFVEQAKQYAETRPSYPQELFEFIASKTPSRDLVWDVGTGSGQAARSLAGIYKNVIGTDTSLKQLEFAPKLPNVRYQQTPPVMSMGELEQTVSTQSS VDLVTIAQAMHWFDLPSFYQQVKWVLKKPHGVIAAWCYTIPEVNDSVDSVFNPFYSIDSDPYWEPQRKLVDNKYMSIDFPFEPVEGTDNTGPFKFVTEKM MDLDEYFTYIRSWSAYQTAKAKGVELLRDDVIESFKRAWNEDGHGQKVVKFPVHLKIGKVGNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41380			S-adenosyl-L-methionine-depend...		Potri.006G042200 [exp]	0	1
AT5G36160			Tyrosine transaminase family p...		Potri.017G014200 [exp]	1.00	0.9945
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Potri.002G163700 [exp]	2.00	0.9942	Pt-ACS1.3
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.012G121320 [exp]	3.00	0.9923
AT5G57510			unknown protein		Potri.018G094100 [exp]	5.29	0.9917
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Potri.014G014000 [exp]	6.92	0.9829
AT5G44440			FAD-binding Berberine family p...		Potri.011G158100 [exp]	7.34	0.9854
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.014G132500 [exp]	12.84	0.9768
					Potri.006G008132 [exp]	14.83	0.9784
					Potri.018G091032 [exp]	14.83	0.9777
AT1G69730			Wall-associated kinase family ...		Potri.003G185850 [exp]	17.88	0.9798

Compare expression of checked genes

Potri.006G042200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.