Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50160 110 / 1e-25 Plant protein of unknown function (DUF247) (.1) AT3G50170 109 / 4e-25 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 106 / 3e-24 Plant protein of unknown function (DUF247) (.1) AT3G50130 102 / 7e-23 Plant protein of unknown function (DUF247) (.1) AT3G50150 102 / 7e-23 Plant protein of unknown function (DUF247) (.1) AT3G50140 100 / 4e-22 Plant protein of unknown function (DUF247) (.1) AT3G50190 88 / 2e-18 Plant protein of unknown function (DUF247) (.1) AT5G11290 84 / 4e-17 Plant protein of unknown function (DUF247) (.1) AT3G47250 82 / 2e-16 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50180 82 / 3e-16 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G042500 [exp] 880 / 0 AT3G50120 108 / 8e-25 Plant protein of unknown function (DUF247) (.1) Potri.016G039100 [exp] 457 / 4e-155 AT3G50160 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Potri.016G039733 [exp] 347 / 2e-113 AT3G50120 120 / 6e-29 Plant protein of unknown function (DUF247) (.1) Potri.016G039700 [exp] 347 / 2e-113 AT3G50120 120 / 6e-29 Plant protein of unknown function (DUF247) (.1) Potri.016G039200 [exp] 179 / 6e-50 AT3G50150 151 / 4e-40 Plant protein of unknown function (DUF247) (.1) Potri.016G039300 [exp] 172 / 3e-47 AT3G50150 154 / 3e-41 Plant protein of unknown function (DUF247) (.1) Potri.006G042946 [exp] 159 / 2e-42 AT3G50120 182 / 2e-51 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 152 / 2e-40 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) Potri.016G039800 [exp] 144 / 2e-38 AT3G50180 127 / 4e-32 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 115 / 3e-27 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 110 / 3e-25 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 95 / 1e-20 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 87 / 8e-18 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 86 / 1e-17 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 80 / 1e-15 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 79 / 3e-15 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10004515 [exp] 75 / 3e-15 AT3G50120 112 / 4e-29 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 78 / 7e-15 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 77 / 8e-15 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.006G042300.5 pacid=42769934 polypeptide=Potri.006G042300.5.p locus=Potri.006G042300 ID=Potri.006G042300.5.v4.1 annot-version=v4.1 ATGGCCGAAATGCAGCTAAATGAAATAAGAGTTGATCCGTTGACGAACAGGCAGGAAGATCCTCTAAGCAACAGACCTGAGCGAGGGTCAAAGATGGCCA TGTCAGAAATACAAGGTACCTCATCGCAAACAAATGAGCATTGTTTGTGTCTTAGCGGCATAATGAGAGGATTTGAAGAGGCTAAAACCAAGCAACAGTC AGGGCCAATGATTCCAAAGGTTCCAGATAATCTCAAGGATGATGAAAACAAGAAATACTACAAGCCCTCGGTGGTCTCAATTGGTCCTTATCACTATAAG GATCGTCAAAACAAGCTCCATGAGGCGGAGAAACTGAAGGTTCAGATGGCTCGTGAATTCGTCCTGTATAGTAAGAAAGACATGGAAATCTTATACAGCG AGGTTGCAAAGGTGGCAGAGAATGCAAAGAGATTTTACGAGGGGAGCTCAATAAGATGCTTTGATGATGAGCAATTCACGCAGATGATGTTTCTTGATGG TTGCTTTATTCTCCAATTCATCCGTTGTGTCAGTACTACTGACAATATTAAAAATATGAGTGATCAACAAATTTTCCATGTTAAGCAGGACCTGCTATTG TTGGAAAATCAGCTCCCTTTTCCAGTCTTGAAGTCATTGATGAGCTTGACGCCCGATGGAAAAGATCATGGAATGAAAATCATCAATGATTTTCTCTCAC TCCAAATTCTCCAACAAAGTAATCATCAACGACGTCCTGTGCTCACTTGGCTTGTTAAAGGGTATCTCCTGTTACTTCTTATATATACTACAGTAGCTTA CCCTTTCCATGTTCTTCAAGGCTCAGAGGACTCCCTTTTTTTCTCCCCTCTTTTTGGCATCTTGGTTGCTGGCGTGATATTTGTTTGCCAAATGGTCGCC TCGCTTATGAGGTCACTCCTATGCGAAAACAAATGGCAGGCGGCAAAATATCATTGGCCCCCTCATCAAGAGCCTGTCCATATTCTTGAACTTCTATACT CCATGTTCATACGTTCTCCAAAAGAAAAACATAAGCTGTCTCTAAGAAGCTGCTGTATTCATTACTTGTCTGAGTGTCTTGGGAATTTATTTCCTAAATC CAAGCCGGGCAAACGTGGCCACAATTTGTATTATTCTGCTAAGGATCTTCAGAAGGTGGGAATCTACTTTAAGCCTAGCAAGACAAACACTTTGATGGAT GTCGAGTTCGTGTCATCAATTTTCTATGCAACATTGAAACTTCCTTCAATTACTATAGAAAAAGCAACCAGGTCCATGCTGTTGAACTTAGTGGCCTACG AAACAGCTGCTTTTCTCGATGATCTTTGGGTCACTTCTTATATATGCTTCATAGACTCGCTCATTAATGATGCTGAAGATGTGAAAGTGTTGAGGTCAAA CGGCATACTTATCAATTATCTTGGACCTGACCAGAAGGTAGCGGATCTCTTCAATCAAATTGGCCATTCCCGAGAACCTAATACTAATGTTTATAATGAT GTTAAAGGAGAGATTAATCTTTCGTGTGATAGCATCTGGAAGAAATGGATAGCTGAGTGTCTGCAAACTTATTTTAGCAGTCCTTGGGCCTTTATTGCAT TTGTTGCTGCAGCTACTGGCTTGGTTCTAACTGCCACTCAAACATACTATACATTGTATCCCTACAAGTCAAGTGATTCACCTATGTCAGTTGGAACCTG A
AA sequence Show only first row Show all	>Potri.006G042300.5 pacid=42769934 polypeptide=Potri.006G042300.5.p locus=Potri.006G042300 ID=Potri.006G042300.5.v4.1 annot-version=v4.1 MAEMQLNEIRVDPLTNRQEDPLSNRPERGSKMAMSEIQGTSSQTNEHCLCLSGIMRGFEEAKTKQQSGPMIPKVPDNLKDDENKKYYKPSVVSIGPYHYK DRQNKLHEAEKLKVQMAREFVLYSKKDMEILYSEVAKVAENAKRFYEGSSIRCFDDEQFTQMMFLDGCFILQFIRCVSTTDNIKNMSDQQIFHVKQDLLL LENQLPFPVLKSLMSLTPDGKDHGMKIINDFLSLQILQQSNHQRRPVLTWLVKGYLLLLLIYTTVAYPFHVLQGSEDSLFFSPLFGILVAGVIFVCQMVA SLMRSLLCENKWQAAKYHWPPHQEPVHILELLYSMFIRSPKEKHKLSLRSCCIHYLSECLGNLFPKSKPGKRGHNLYYSAKDLQKVGIYFKPSKTNTLMD VEFVSSIFYATLKLPSITIEKATRSMLLNLVAYETAAFLDDLWVTSYICFIDSLINDAEDVKVLRSNGILINYLGPDQKVADLFNQIGHSREPNTNVYND VKGEINLSCDSIWKKWIAECLQTYFSSPWAFIAFVAAATGLVLTATQTYYTLYPYKSSDSPMSVGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50160			Plant protein of unknown funct...		Potri.006G042300 [exp]	0	1
AT3G20600		NDR1	non race-specific disease resi...		Potri.004G023400 [exp]	1.73	0.9770
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	2.00	0.9769
AT5G51160			Ankyrin repeat family protein ...		Potri.014G050600 [exp]	2.00	0.9780
AT1G14730			Cytochrome b561/ferric reducta...		Potri.010G102400 [exp]	3.00	0.9796
AT4G13600			Carbohydrate-binding X8 domain...		Potri.001G315700 [exp]	6.32	0.9750
AT1G71140			MATE efflux family protein (.1...		Potri.004G093400 [exp]	7.48	0.9480
AT5G48500			unknown protein		Potri.002G250800 [exp]	8.94	0.9661
					Potri.012G018900 [exp]	9.00	0.9010
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.012G038100 [exp]	10.39	0.9750	NAC020
AT5G22870			Late embryogenesis abundant (L...		Potri.009G003800 [exp]	11.31	0.9693

Compare expression of checked genes

Potri.006G042300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.