Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 108 / 6e-25 Plant protein of unknown function (DUF247) (.1) AT3G50140 105 / 6e-24 Plant protein of unknown function (DUF247) (.1) AT3G50130 104 / 2e-23 Plant protein of unknown function (DUF247) (.1) AT3G50160 103 / 3e-23 Plant protein of unknown function (DUF247) (.1) AT3G50170 103 / 4e-23 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 100 / 3e-22 Plant protein of unknown function (DUF247) (.1) AT3G50180 91 / 4e-19 Plant protein of unknown function (DUF247) (.1) AT5G22540 86 / 1e-17 Plant protein of unknown function (DUF247) (.1) AT3G50190 85 / 3e-17 Plant protein of unknown function (DUF247) (.1) AT2G36430 83 / 1e-16 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G042300 [exp] 923 / 0 AT3G50160 110 / 2e-25 Plant protein of unknown function (DUF247) (.1) Potri.016G039100 [exp] 478 / 4e-163 AT3G50160 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Potri.016G039733 [exp] 351 / 5e-115 AT3G50120 120 / 6e-29 Plant protein of unknown function (DUF247) (.1) Potri.016G039700 [exp] 351 / 5e-115 AT3G50120 120 / 6e-29 Plant protein of unknown function (DUF247) (.1) Potri.006G042800 [exp] 258 / 4e-79 AT3G50120 155 / 2e-41 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 230 / 5e-69 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) Potri.015G019000 [exp] 224 / 1e-66 AT3G50160 127 / 1e-31 Plant protein of unknown function (DUF247) (.1) Potri.016G039500 [exp] 218 / 2e-64 AT3G50150 167 / 3e-46 Plant protein of unknown function (DUF247) (.1) Potri.016G039200 [exp] 176 / 5e-49 AT3G50150 151 / 4e-40 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 125 / 1e-30 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 110 / 2e-25 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 102 / 6e-23 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 101 / 1e-22 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 99 / 7e-22 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 95 / 1e-20 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 91 / 3e-19 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 87 / 4e-18 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 87 / 8e-18 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 86 / 2e-17 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.006G042500.5 pacid=42768665 polypeptide=Potri.006G042500.5.p locus=Potri.006G042500 ID=Potri.006G042500.5.v4.1 annot-version=v4.1 ATGGCCGAAATGCAGCTAAATGAAATAAGAGTTGATCCGTTGACGAACAGGCAGGAAGATCCTCTAAGCAACAGACCTGAACAAGGGTCAAAGATGGCCA TGTCAGAAATACAAGGTACCTCATCGCAAACAAATGAGCGTTCTTTGTGGCTTAGCGGCATAATGAGAGGAGTTGAAGGGGCTAAAACCAAGCAACGGTA CTCAGGGCCAATGATTCCAAAGGTTCCAGATAAACTCAAGCATGAAAACAAGGAATGCTACAAGCCCTCGGTGGTCTCAATTGGTCCTTATCACTATAAG GATCGTCAAAACAAGCTCCATGAGGTGGAGAAACTGAAGGTTCAGATGGCTCGTGAATTCGTCCTGGATAGTAAGATTAAAGACATAGAAATCTTATACA GTGAGGTTGCAAAGGTGGCAGAGAATGCAAAGAGATTTTACGAGGGGAGCTCAATAAGTTGCTTTGATGATGAGCAATTCACGCGGATGATGTTTCTTGA TGGTTGCTTTATTCTCCAATTCATCCGTGGTGTCATGGACAATAAATTGGATATGAGTGATCAACAAATTATCCTTGTTAAGCAGGACCTGCTATTGTTG GAAAATCAGCTCCCTTTTTCAGTCTTGAAGTCATTGATGAGCTTGAAGAACGATGGAGATGATCGTGGAAAGGAAATCAATATCAATGATTTTCTTTTAC TCCAGATTCTCCAACAAAGTGATCAACGACGTCCAGTGTGGGTGCTCTCTTGGCTTGTTAAAGGGTATCTCCTGTTACTTCTTATATATACTTCAGTAGT TTACCCTTTCCATATTCTTCAAGGCAAGGACTCCTTTTTTTTCTCCCCTCTTTTTGGCATCTTGGTTGCTGGCGTGATTTTTGTTTGCAAAATGGTCGCC TCGCTTATGAGGTCACTCCTATGCGGAAACAAATGGCAGGCGGCGAAATATCATTGGCCCCCTCATCAAGAGCCTGCTCATATTCTTGAACTTCTATACT CCATGTTCGTACGTTCTCAAAAAGAAAAACATAAGCTGTCTCTAAGAAGCTGCTGTATTTATGACTTGCCTGGGCGTCTTAGGAATTTATTTCCTAAATC CAAGCTGGGCAAACGTGGCCACAATTTGTATTATTCTGCTAAGGATCTTCAGAAGGTGGGAATCCACTTTAAGCCTAGCAAGACAAGCACTTTGATGGAT GTCGAGTTCGTGTCATCAATTTTCTATGCAACATTGAAAATTCCTTCAATTACTATAGAAAAAGCAACCAGGTCCATGCTGTTGAACTTAGTGGCCTACG AAACAGCTGCTTTTCTCGATGATCTTTGGGTCACCTCTTATATATGCTTCATAGACTCGCTCATTGATGATGCTGAAGATGTGAAAGTGTTGAGGTCAAA GGGCATACTTACCAATTATCTTGGACCTGACCAGAAGGTAGCGGATCTCTTCAATCAAATTGGCCGTTCCCTAGAACCCACCAACACTAATATTGTTTAT AATGATGTTAAAAGAAAGATTAATGTTTCGTGTGATAGCACCTGGAAGAAATGGATAGCTGAGTGGCTGCAAACTTATTTTAGCAGTCCTTGGGCCTTTA TTGCATTTGTTGCTGCAGCTGCTGTCTTGGTTCTAACTGCCACTCAGACATACTATACAGTGTATCCCTACAAGTCAAGTGATTCACCTATGTCAGTTGG AACCTGA
AA sequence Show only first row Show all	>Potri.006G042500.5 pacid=42768665 polypeptide=Potri.006G042500.5.p locus=Potri.006G042500 ID=Potri.006G042500.5.v4.1 annot-version=v4.1 MAEMQLNEIRVDPLTNRQEDPLSNRPEQGSKMAMSEIQGTSSQTNERSLWLSGIMRGVEGAKTKQRYSGPMIPKVPDKLKHENKECYKPSVVSIGPYHYK DRQNKLHEVEKLKVQMAREFVLDSKIKDIEILYSEVAKVAENAKRFYEGSSISCFDDEQFTRMMFLDGCFILQFIRGVMDNKLDMSDQQIILVKQDLLLL ENQLPFSVLKSLMSLKNDGDDRGKEININDFLLLQILQQSDQRRPVWVLSWLVKGYLLLLLIYTSVVYPFHILQGKDSFFFSPLFGILVAGVIFVCKMVA SLMRSLLCGNKWQAAKYHWPPHQEPAHILELLYSMFVRSQKEKHKLSLRSCCIYDLPGRLRNLFPKSKLGKRGHNLYYSAKDLQKVGIHFKPSKTSTLMD VEFVSSIFYATLKIPSITIEKATRSMLLNLVAYETAAFLDDLWVTSYICFIDSLIDDAEDVKVLRSKGILTNYLGPDQKVADLFNQIGRSLEPTNTNIVY NDVKRKINVSCDSTWKKWIAEWLQTYFSSPWAFIAFVAAAAVLVLTATQTYYTVYPYKSSDSPMSVGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50120			Plant protein of unknown funct...		Potri.006G042500 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.012G090400 [exp]	1.00	0.9881
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Potri.005G079000 [exp]	4.00	0.9444
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G120000 [exp]	4.69	0.9635
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	5.47	0.9561
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.001G453000 [exp]	7.54	0.9331
AT1G75260			oxidoreductases, acting on NAD...		Potri.005G228400 [exp]	7.74	0.9399
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340500 [exp]	8.24	0.9549
AT3G18670			Ankyrin repeat family protein ...		Potri.005G057900 [exp]	8.36	0.9522
AT5G66600			Protein of unknown function, D...		Potri.004G150000 [exp]	8.71	0.9079
AT3G18670			Ankyrin repeat family protein ...		Potri.002G048832 [exp]	9.16	0.9452

Compare expression of checked genes

Potri.006G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.