Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14800 416 / 4e-148 EMB2772, AT-P5C1, AT-P5R, P5CR EMBRYO DEFECTIVE 2772, pyrroline-5- carboxylate (P5C) reductase (.1), pyrroline-5- carboxylate (P5C) reductase (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007450 [exp] 75 / 5e-17 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034453 [exp] 445 / 1e-159 AT5G14800 417 / 1e-148 EMBRYO DEFECTIVE 2772, pyrroline-5- carboxylate (P5C) reductase (.1), pyrroline-5- carboxylate (P5C) reductase (.2) Lus10019103 [exp] 443 / 5e-159 AT5G14800 416 / 3e-148 EMBRYO DEFECTIVE 2772, pyrroline-5- carboxylate (P5C) reductase (.1), pyrroline-5- carboxylate (P5C) reductase (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03807 [poplar] [flax] F420_oxidored NADP oxidoreductase coenzyme F420-dependent CL0106 [poplar] [flax] 6PGD_C PF14748 [poplar] [flax] P5CR_dimer Pyrroline-5-carboxylate reductase dimerisation
Representative CDS sequence Show only first row Show all	>Potri.006G042600.1 pacid=42769391 polypeptide=Potri.006G042600.1.p locus=Potri.006G042600 ID=Potri.006G042600.1.v4.1 annot-version=v4.1 ATGGAGGCGACACAGTTCTTAGCTATACAAACAGAGACATACAAGTTGGGTTTTATTGGAGCAGGTAAAATGGCAGAGAGTATTGCTAAAGGAGCTGTTC AATCTGGGTTTTTGCCGCCTCCTCGTATCTCTACTTCAATCCACTCCAATCCTGCTCGCCGTCTCGCTTTTGACTCTCTTGGGGTCAAAGTTCTCCCTCA GAATCGCAATGTTGTTGAAGAGAGTGATGTGGTGATTTTCTCCGTCAAACCACAAGTTGTGAGAGATGTTGTTTTGGAATTAAGGCCATTGCTAACGAAG GACAAGCTTTTGGTTTCAATTGCGGCTGGAACAAAATTGAAAGATTTGCAGGAATGGGCTGGTCATAGCCGATTTATCAGAGTGGTGCCTAATACTCCTT CAGCTGTTGGTGAGGCAGCTTCAGTTATGTGCTTGGGTGGAGCTGCAACTGAAGAAGATGGAGAACTGGTAGCTAAATTGTTTGGATCGGTTGGCAAGAT ATGGAGAGCTGACGAGAAATTGTTTGATGCAATTGTTGGCCTAAGTGGAAGTGGCCCAGCTTACATATACCTAGCAATTGAAGCTTTGGCTGATGGAGGA GTGGCTGCAGGTCTACCGCGAGAACTTGCAATGGGCCTAGCCTCTCAAACTGTTCTAGGGGCAGCATCTATGGCCTCTAAAACTGGGAAGCATCCTGGTC AACTTAAAGATGACGTTGCTTCACCTGGGGGGACAACTATTGCTGGTATTCATGAATTGGAGAAGGGTGGATTTCGTGGAACACTAATGAATGCTGTTGT TGCTGCTGCAAAGCGCAGCCGAGAACTTTCCCAGAGCTAA
AA sequence Show only first row Show all	>Potri.006G042600.1 pacid=42769391 polypeptide=Potri.006G042600.1.p locus=Potri.006G042600 ID=Potri.006G042600.1.v4.1 annot-version=v4.1 MEATQFLAIQTETYKLGFIGAGKMAESIAKGAVQSGFLPPPRISTSIHSNPARRLAFDSLGVKVLPQNRNVVEESDVVIFSVKPQVVRDVVLELRPLLTK DKLLVSIAAGTKLKDLQEWAGHSRFIRVVPNTPSAVGEAASVMCLGGAATEEDGELVAKLFGSVGKIWRADEKLFDAIVGLSGSGPAYIYLAIEALADGG VAAGLPRELAMGLASQTVLGAASMASKTGKHPGQLKDDVASPGGTTIAGIHELEKGGFRGTLMNAVVAAAKRSRELSQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Potri.006G042600 [exp]	0	1
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.011G096300 [exp]	3.46	0.8931
AT1G57720			Translation elongation factor ...		Potri.003G004700 [exp]	4.35	0.9186
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.007G000200 [exp]	9.48	0.8938	Pt-TOM40.1
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Potri.007G137500 [exp]	9.79	0.8829
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	10.39	0.8963
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.007G035600 [exp]	14.14	0.8917
AT5G08690			ATP synthase alpha/beta family...		Potri.010G116600 [exp]	14.45	0.8850	PtrAtpB_1,ATP.1
AT2G20420			ATP citrate lyase (ACL) family...		Potri.014G195700 [exp]	14.86	0.8783
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454000 [exp]	16.43	0.8967
AT5G09570			Cox19-like CHCH family protein...		Potri.001G282900 [exp]	18.33	0.8306

Compare expression of checked genes

Potri.006G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.