Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 155 / 2e-41 Plant protein of unknown function (DUF247) (.1) AT3G50120 155 / 3e-41 Plant protein of unknown function (DUF247) (.1) AT3G50170 152 / 3e-40 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 149 / 3e-39 Plant protein of unknown function (DUF247) (.1) AT3G50140 144 / 2e-37 Plant protein of unknown function (DUF247) (.1) AT3G50180 144 / 2e-37 Plant protein of unknown function (DUF247) (.1) AT3G50130 134 / 8e-34 Plant protein of unknown function (DUF247) (.1) AT5G22540 130 / 6e-33 Plant protein of unknown function (DUF247) (.1) AT2G36430 122 / 4e-30 Plant protein of unknown function (DUF247) (.1) AT3G47200 104 / 7e-24 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G039601 [exp] 596 / 0 AT3G50170 153 / 2e-40 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G039600 [exp] 592 / 0 AT3G50170 149 / 4e-39 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G040000 [exp] 550 / 0 AT3G50180 147 / 5e-38 Plant protein of unknown function (DUF247) (.1) Potri.006G042873 [exp] 524 / 0 AT3G50180 157 / 6e-42 Plant protein of unknown function (DUF247) (.1) Potri.016G039500 [exp] 472 / 7e-164 AT3G50150 167 / 3e-46 Plant protein of unknown function (DUF247) (.1) Potri.016G039866 [exp] 457 / 2e-158 AT3G50180 164 / 2e-44 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 397 / 1e-134 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) Potri.016G039300 [exp] 389 / 2e-131 AT3G50150 154 / 3e-41 Plant protein of unknown function (DUF247) (.1) Potri.015G019000 [exp] 388 / 1e-130 AT3G50160 127 / 1e-31 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011501 [exp] 147 / 2e-38 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 137 / 1e-35 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 132 / 2e-33 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 130 / 4e-33 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 130 / 8e-33 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 127 / 1e-31 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 124 / 1e-30 AT4G31980 251 / 5e-76 unknown protein Lus10027720 [exp] 124 / 3e-30 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 121 / 1e-29 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 120 / 2e-29 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.006G042800.1 pacid=42767714 polypeptide=Potri.006G042800.1.p locus=Potri.006G042800 ID=Potri.006G042800.1.v4.1 annot-version=v4.1 ATGCCTGAAAAAATTGATATCGTGATCGCAGATCATGCAAGCCTGCAGCAATCTACCTCTCGCTTTGACGAGTGGCTGAAATCGATGATGGACAGAAAGA GGGAACAGACCGGCAACTACCAACTGGGAGGGCCTATCATTCCAAGGGTCCCACCGACGTTTCGTAAAATTGAAAATAACAGTGGTTGCTACGATCCATC GGTGGTCTCCATCGGTCCCTATCACCATGGGAAACCAGAACTCAAGGAAATGGAGGACAACAAAGTCACATTCGCGAGCCAGTTCGTCATGGAGAGTCAA GTGGCCCCTGATACAATGTTCTGCAAGGTTGAAGGGGTGGCGAGCAATGCAAGGAAATGCTATACAGAGGATTCAACGCAGAAGTTTGAGGACAAGGAGT TTTCCCAGATGATGTTTCTTGATGGTTGCTTCATTCTCCATTTCTTCTTCTGCCTCTCAGAGCAACCTGAAAAACTAAAGATGTCTAATCACCATGTGTC TTTGGTTGCAAGGGATTTGTTCTTACTAGAGAACCAACTCCCTTTTGAAGTTCTCCTTGAACTAATGAGTTTGAGGTTCAATATTCAAGGAGGGGAGAGA GTGGATCTGTTTGAGCCTTTCTTCAAGCATATTCGCTCAATGCCCCCTCGAAGAGAGTCATGTAGGGAAAAGTTATCAAAAAACTTAGCAACCATTTCAA GTTTTTTTCGCAGTCTGCTAAAATTATTTTCAAGTACTGATCATCCAAAATCCCCAACAAATGAGTTGACTGCGATTCATCGTAAGCCTGCCTATCTTCT AGAACTTTTTCATAACAAATTTGTTGCCAGGAGCATAATAGATGCCGCAGGTGTTAAGGATCACAAAAGCTGGTACAAGGATGATTCTCGAAAGAGCTGG TCTGGCCGGTATTATCCCGCGAAGGACCTTAGGAAGGCTGGAATCCATTTCAAGCCAAGCAAGACAAGTCTTTTCACCGATGTCAGCTTCACGCCAACAT TACTCGCTGGAAGACTCTACATTCCTCCGCTAAGAATAGATGACTCAACCAAGCCCTTGCTCTTAAACCTTGTAGCCTATGAAGCATGTCTTGGTACGTG CGATGATTGGGTCACTTCCTATGTATGCTTCATGGATTCATTGATTGATCATCATAAAGATGTGAAGGAGCTGCGATCTAAAGGCATACTCATCAGTACT CTTGGAAGCGACAAACAGGTAGCAGAACTCTTCAATGAGATATCTGATTATTTAGTACCTAATCCCTATGCATACTCCAAGGTTAAAAGAGACATCGAAA ATCATTATAGAAACGGCATCAAGCGATGGATCCTTCATTATAAGGGTCCTACTTATACCTTCATTTTCAAGTACTCATTTATTTTTGGCCTCATAGTGAC TGCCATAAAGGCCTACGTATCAGTAGTTCCCATGAACCCAGTTTTTGGTGTCTGCAAAATGCCTGCCGCAAATGTTACCCTTTACCCTTAA
AA sequence Show only first row Show all	>Potri.006G042800.1 pacid=42767714 polypeptide=Potri.006G042800.1.p locus=Potri.006G042800 ID=Potri.006G042800.1.v4.1 annot-version=v4.1 MPEKIDIVIADHASLQQSTSRFDEWLKSMMDRKREQTGNYQLGGPIIPRVPPTFRKIENNSGCYDPSVVSIGPYHHGKPELKEMEDNKVTFASQFVMESQ VAPDTMFCKVEGVASNARKCYTEDSTQKFEDKEFSQMMFLDGCFILHFFFCLSEQPEKLKMSNHHVSLVARDLFLLENQLPFEVLLELMSLRFNIQGGER VDLFEPFFKHIRSMPPRRESCREKLSKNLATISSFFRSLLKLFSSTDHPKSPTNELTAIHRKPAYLLELFHNKFVARSIIDAAGVKDHKSWYKDDSRKSW SGRYYPAKDLRKAGIHFKPSKTSLFTDVSFTPTLLAGRLYIPPLRIDDSTKPLLLNLVAYEACLGTCDDWVTSYVCFMDSLIDHHKDVKELRSKGILIST LGSDKQVAELFNEISDYLVPNPYAYSKVKRDIENHYRNGIKRWILHYKGPTYTFIFKYSFIFGLIVTAIKAYVSVVPMNPVFGVCKMPAANVTLYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50120			Plant protein of unknown funct...		Potri.006G042800 [exp]	0	1
AT1G15780			unknown protein		Potri.016G028200 [exp]	2.44	0.7685
AT5G19420			Regulator of chromosome conden...		Potri.001G026900 [exp]	9.48	0.7292
					Potri.001G302201 [exp]	22.71	0.7517
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.001G370100 [exp]	31.43	0.7455	Pt-OPT1.1
					Potri.010G112401 [exp]	41.27	0.7246
AT4G16580			Protein phosphatase 2C family ...		Potri.001G089201 [exp]	42.42	0.6970
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.005G260100 [exp]	58.92	0.6916
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019200 [exp]	70.82	0.6859
					Potri.001G422000 [exp]	70.99	0.6788
					Potri.004G174850 [exp]	78.44	0.7011

Compare expression of checked genes

Potri.006G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.