Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 183 / 1e-51 Plant protein of unknown function (DUF247) (.1) AT3G50140 178 / 8e-50 Plant protein of unknown function (DUF247) (.1) AT3G50180 178 / 2e-49 Plant protein of unknown function (DUF247) (.1) AT3G50150 174 / 1e-48 Plant protein of unknown function (DUF247) (.1) AT3G50130 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) AT3G50170 172 / 1e-47 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 171 / 2e-47 Plant protein of unknown function (DUF247) (.1) AT3G50190 157 / 2e-42 Plant protein of unknown function (DUF247) (.1) AT4G31980 129 / 1e-31 unknown protein AT5G22550 123 / 2e-30 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G039300 [exp] 347 / 3e-115 AT3G50150 154 / 3e-41 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 339 / 5e-112 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) Potri.016G039500 [exp] 332 / 2e-109 AT3G50150 167 / 3e-46 Plant protein of unknown function (DUF247) (.1) Potri.016G039200 [exp] 330 / 2e-108 AT3G50150 151 / 4e-40 Plant protein of unknown function (DUF247) (.1) Potri.006G042800 [exp] 323 / 2e-105 AT3G50120 155 / 2e-41 Plant protein of unknown function (DUF247) (.1) Potri.016G039866 [exp] 313 / 5e-102 AT3G50180 164 / 2e-44 Plant protein of unknown function (DUF247) (.1) Potri.006G042873 [exp] 308 / 6e-100 AT3G50180 157 / 6e-42 Plant protein of unknown function (DUF247) (.1) Potri.016G039601 [exp] 304 / 8e-98 AT3G50170 153 / 2e-40 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G039600 [exp] 302 / 3e-97 AT3G50170 149 / 4e-39 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011501 [exp] 175 / 1e-48 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 159 / 4e-43 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 143 / 1e-37 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 142 / 4e-37 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 142 / 6e-37 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 129 / 2e-32 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 126 / 1e-31 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 121 / 9e-30 AT4G31980 251 / 5e-76 unknown protein Lus10004516 [exp] 115 / 8e-28 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 115 / 8e-28 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.006G042946.1 pacid=42767184 polypeptide=Potri.006G042946.1.p locus=Potri.006G042946 ID=Potri.006G042946.1.v4.1 annot-version=v4.1 ATGTCAGAGATGAAGAAGTCCTATGATCTAGAGCCTCTATTAAAGGCGGCATTTGCAACTGAATCCCAGCAGATAGAAGGCTTTGCTTTGTCGGGGCGTT GTGGAATAAGAATATCACGACAACATACTATTCAAGTTGGACAAGAGGAAAGTTCTAAGATATGTCACAGGGTTCCGAGGATATTTCGTAGGAATCCATC CAGCAACGAGGATTGCTACAATCCCCTTGTGGTATCTATTGGTCCTTACCACCACAACGATGATCCTAATCATGAGCTTGCTGAGATGCAGAGCCTCAAG AATGAAATGGTGCAACAGTTTGCCAACGAGAGTGGGAAAACCAGGGAAGTCTTGTACAGTAAAGTGGAAGAATTGGCCGTCTCTGCAAAGAAATGCTATG ATGAACGTTCAACAAAAGACTTGGGTGACAAGGCATTCACGGAGATGATGCTCCTTGATGGTTGCTTCATTCTCCAATTTATCTTCTGCTTCTTGCACGA TTTTCAGAATCTGAAGCTAAGTAATCGAGTTCTTGCTTATTTTGTTAAACGTGACTTGTTCTTACTAGAGAACCAAATCCCTTACGAAGTTCTTAAGTCG TTGATGAGCTTACGGTTTGGTGATGCCGAAGGAAAGAAGCTGATGGAAGATTTCATGGACGATGTTCGTGGACTTCCCAGAGATAAAAGTAGAGACAAGG AGAATGGAAAGGGCTTGGATTGCAGATTTTGGTCATGGCGACCAGCACCAAAGATGAACAATCAACCAGGTGAAATACCTCAAGTACCAGGTGAAATACC TCAACCAGTCCATCTTCTTGACTTTTTTCACAACCGATTCATGGGGGGATCAAGAGGCCAAGAAAATCTCTCTCTAAAGGGTGATGGTCAATGGTCCTCG TATCGTTCTGTCATGGAGCTGAAGTCGGTGGGAATCCACTTCATGCCAAGCAAGACTGATATGTACACAGATATCCTATACAAATCAACAATGCGTGGCG GAACAGTCACACTTCCTCGAATAGTCATAGACGACAGTACTAAGTCCTTGCTTTTAAACCTGATGGCCCATGAAGCATGCCCTGGACCAGCTGAGGGGTT TGGGGTCACTTCTTACGTATACTTCATGGACTCATTGATTGATCACCCTGAAGATGTGAAAGAACTGCGGAAAAAGGGCATATTATCCAATGTTCTTGGA AGCGACCAAGAGGTTGCAGATCTCTTCAATGAAATTTCCAGTTTCATGGTGTTCGACCCTAATGCTTACGGTAATGTTAAATCCAGTATTGAGAAGCATT GCAAGAATGTCATCAAGAAATGGGCAGCAGAGTGGTTGAATGATCATTTTAGCAGCCCTTGGACCTTTTTGGCATTTTTCGGTGCAATCTTTGCCCTCGT ACTTACCTTCATCCAGACCTATAAAACACTATACCCAGGTAACCAGTAA
AA sequence Show only first row Show all	>Potri.006G042946.1 pacid=42767184 polypeptide=Potri.006G042946.1.p locus=Potri.006G042946 ID=Potri.006G042946.1.v4.1 annot-version=v4.1 MSEMKKSYDLEPLLKAAFATESQQIEGFALSGRCGIRISRQHTIQVGQEESSKICHRVPRIFRRNPSSNEDCYNPLVVSIGPYHHNDDPNHELAEMQSLK NEMVQQFANESGKTREVLYSKVEELAVSAKKCYDERSTKDLGDKAFTEMMLLDGCFILQFIFCFLHDFQNLKLSNRVLAYFVKRDLFLLENQIPYEVLKS LMSLRFGDAEGKKLMEDFMDDVRGLPRDKSRDKENGKGLDCRFWSWRPAPKMNNQPGEIPQVPGEIPQPVHLLDFFHNRFMGGSRGQENLSLKGDGQWSS YRSVMELKSVGIHFMPSKTDMYTDILYKSTMRGGTVTLPRIVIDDSTKSLLLNLMAHEACPGPAEGFGVTSYVYFMDSLIDHPEDVKELRKKGILSNVLG SDQEVADLFNEISSFMVFDPNAYGNVKSSIEKHCKNVIKKWAAEWLNDHFSSPWTFLAFFGAIFALVLTFIQTYKTLYPGNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50120			Plant protein of unknown funct...		Potri.006G042946 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Potri.002G018800 [exp]	1.00	0.9385
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	1.41	0.8941
AT1G53440			Leucine-rich repeat transmembr...		Potri.011G073591 [exp]	4.89	0.8648
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	6.48	0.7967
ATMG00810		ATMG00810.1, OR...	DNA/RNA polymerases superfamil...		Potri.013G138801 [exp]	14.49	0.7612
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.005G198800 [exp]	16.37	0.7416	RAB7.1
AT3G55700			UDP-Glycosyltransferase superf...		Potri.010G195600 [exp]	24.97	0.7637
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	25.49	0.7517
AT1G09600			Protein kinase superfamily pro...		Potri.003G003700 [exp]	26.98	0.7491
AT3G59890			Dihydrodipicolinate reductase,...		Potri.007G145900 [exp]	28.28	0.6852

Compare expression of checked genes

Potri.006G042946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.