Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10230 794 / 0 AtLCY, LYC lycopene cyclase (.1.2) AT5G57030 265 / 1e-82 LUT2 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G040200 [exp] 936 / 0 AT3G10230 770 / 0.0 lycopene cyclase (.1.2) Potri.009G159800 [exp] 525 / 0 AT3G10230 538 / 0.0 lycopene cyclase (.1.2) Potri.004G197100 [exp] 514 / 7e-180 AT3G10230 533 / 0.0 lycopene cyclase (.1.2) Potri.006G147300 [exp] 269 / 2e-83 AT5G57030 723 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Potri.001G229166 [exp] 147 / 3e-42 AT3G10230 137 / 7e-40 lycopene cyclase (.1.2) Potri.001G219250 [exp] 67 / 7e-14 AT3G10230 62 / 8e-13 lycopene cyclase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027278 [exp] 843 / 0 AT3G10230 832 / 0.0 lycopene cyclase (.1.2) Lus10038986 [exp] 842 / 0 AT3G10230 831 / 0.0 lycopene cyclase (.1.2) Lus10013298 [exp] 471 / 2e-162 AT3G10230 508 / 3e-177 lycopene cyclase (.1.2) Lus10021576 [exp] 272 / 5e-85 AT5G57030 805 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10017156 [exp] 268 / 1e-78 AT5G57030 801 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10005190 [exp] 159 / 1e-46 AT3G10230 159 / 3e-48 lycopene cyclase (.1.2) Lus10005189 [exp] 133 / 3e-37 AT3G10230 131 / 2e-38 lycopene cyclase (.1.2) Lus10000221 [exp] 113 / 3e-29 AT5G57030 251 / 9e-82 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05834 [poplar] [flax] Lycopene_cycl Lycopene cyclase protein
Representative CDS sequence Show only first row Show all	>Potri.006G043092.1 pacid=42770182 polypeptide=Potri.006G043092.1.p locus=Potri.006G043092 ID=Potri.006G043092.1.v4.1 annot-version=v4.1 ATGGATACTTTGTTGAAAACACATAACAAGATTGAATTTTTGCCTCAATTTCATGGGTTTTCGGAGAAAGTGAGTAATTCGAGCTCCGTAAAGATTCAAA TCCAGGAACTTAGGTTTGGTCCCAAAAAGTTTTTTTCAAAAGTGGGGAGGAATGGTTGTGTTGAGGCTAGTAGTAGTGCACTTTTGGAGCTTGTACCAGA AACCAAGAAGGAAAATCTTGAGTTTGATCTTCCTATGTATGACCCATCGAAAGGCCTTGTAGTTGACCTTGCAGTTGTGGGGGGAGGTCCTGCAGGGCTT GCTGTTGCTCAGCAAGTTTCGGAGGCAGGGCTCTCGGTTTGTTCGATTGATCCATCTCCTCAGTTGATTTGGCCTAATAATTATGGTGTTTGGGTTGATG AATTTGATGCCATGGGTTTGCTTGACTGCCTTGATACCACTTGGTCTGGTGCTGTTGTCTATGTTAATGACAAGACAAAAAAAGATCTTGATAGGCCTTA TGGGAGGGTTAATAGGAAGCAGCTGAAGTCCAAAATGTTACAGAAATGCATATCCAATGGTGTTAAGTTTCACCAAGCTAAAGTTATCAAGGTTATTCAT GAGGAGTCCAAATCTCTATTGATTTGCAATGATGGTGTCACAATCCAAGCTGTCGTGGTTCTTGATGCAACTGGTTTTTCTAGATGCCTTGTTCAATATG ACAAGCCATATAATCCAGGTTACCAAGTGGCTTATGGAATTTTGGCAGAGGTAGAAGAGCACCCGTTTGATGTTGATAAGATGGTTTTTATGGATTGGAG AGATTCACATCTGAACAACAATCTGGAACTAAAAGAGAGAAACAGCAAGACCCCTACTTTCCTCTACGCAATGCCCTTTTCATCGGACAGGATATTTCTG GAAGAAACTTCCCTCGTAGCTAGGCCTGGAGTACCCATGAAAGATATACAGGAAAGGATGGTGGCCAGATTAAGGCACCTAGGTATAAAAGTGAAAAGCA TAGAGGAAGATGAGCGTTGTGTCATTCCAATGGGGGGACCACTTCCTGTGCTCCCTCAAAGAGTAGTTGGAATTGGTGGTACAGCCGGTATGGTGCACCC TTCAACTGGGTATATGGTAGCAAGAACTCTAGCAGCTGCTCCGATTGTTGCTAATTCTATCGTTCAGTATCTTGGTTCTGATAGAAGCTTTTCAGGAAGT GAGTTATCAGCTAAAGTTTGGAAAGATTTATGGCCCGTCGAGAGGAGGAGACAAAGAGAGTTCTTCTGTTTTGGTATGGATATTTTGCTTAAGCTTGATT TACCTGCCACAAGAAGATTTTTTGATGCATTTTTTGATCTGGAACCTCATTATTGGCACGGATTCCTATCATCTCGACTGTTTCTACCTGAGCTTGTACT TTTTGGGCTTTCACTGTTCTCCCATGCTTCTAATACTTCTAGGTTAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTTAATATGACCAACAATTTAATA CAGGACAGAGAATAG
AA sequence Show only first row Show all	>Potri.006G043092.1 pacid=42770182 polypeptide=Potri.006G043092.1.p locus=Potri.006G043092 ID=Potri.006G043092.1.v4.1 annot-version=v4.1 MDTLLKTHNKIEFLPQFHGFSEKVSNSSSVKIQIQELRFGPKKFFSKVGRNGCVEASSSALLELVPETKKENLEFDLPMYDPSKGLVVDLAVVGGGPAGL AVAQQVSEAGLSVCSIDPSPQLIWPNNYGVWVDEFDAMGLLDCLDTTWSGAVVYVNDKTKKDLDRPYGRVNRKQLKSKMLQKCISNGVKFHQAKVIKVIH EESKSLLICNDGVTIQAVVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMVFMDWRDSHLNNNLELKERNSKTPTFLYAMPFSSDRIFL EETSLVARPGVPMKDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQYLGSDRSFSGS ELSAKVWKDLWPVERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPHYWHGFLSSRLFLPELVLFGLSLFSHASNTSRLEIMAKGTLPLVNMTNNLI QDRE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.006G043092 [exp]	0	1
AT3G43540			Protein of unknown function (D...		Potri.006G217700 [exp]	1.41	0.9081
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.010G053500 [exp]	3.16	0.8296
AT5G53750			CBS domain-containing protein ...		Potri.004G041000 [exp]	6.63	0.8438
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.004G124800 [exp]	27.44	0.8629
AT4G13550			triglyceride lipases;triglycer...		Potri.010G062700 [exp]	51.02	0.7644
AT1G18010			Major facilitator superfamily ...		Potri.012G005100 [exp]	98.17	0.7851
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.004G092500 [exp]	101.92	0.7875
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G016733 [exp]	108.39	0.7569
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Potri.002G214100 [exp]	180.32	0.7580
AT1G63610			unknown protein		Potri.002G011000 [exp]	181.64	0.7690

Compare expression of checked genes

Potri.006G043092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.