Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10210 360 / 5e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT4G35750 189 / 3e-60 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G69340 59 / 1e-09 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246800 [exp] 199 / 2e-64 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.002G014700 [exp] 187 / 1e-59 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 163 / 3e-50 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.010G161500 [exp] 55 / 2e-08 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 54 / 5e-08 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035431 [exp] 410 / 1e-146 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031044 [exp] 409 / 2e-146 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10041841 [exp] 206 / 6e-67 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10021230 [exp] 205 / 2e-66 AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10005640 [exp] 201 / 5e-65 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10028388 [exp] 200 / 2e-64 AT4G35750 313 / 5e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10030413 [exp] 60 / 3e-10 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 59 / 7e-10 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 56 / 2e-08 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF13716 [poplar] [flax] CRAL_TRIO_2 Divergent CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.006G043166.1 pacid=42769089 polypeptide=Potri.006G043166.1.p locus=Potri.006G043166 ID=Potri.006G043166.1.v4.1 annot-version=v4.1 ATGGCAACCTCATCAAGCGACGATTTCTCAGTATTTGTGTTAGCATCAGATTTAGGCATAGATGCTAGACCCTTTCTCACAAACAAAGAAAGGGAACAAA ATCAAGAAAACCCAGAACCTGAAAACTGGCACGATTGCTGTCAGGATTTTATTTCAGATGAAGATTTCTCTGATCTTGATCTCTTGCAGTTCTTTACCCT TCAAGGTTCTGATAAGTCTGGAAACCGTGTCTTTCGTATTGTTGGCAAGTACTTTCCTGCTCAAGTTGTGAGTGGGGAGCGACTGAAGAAGTATATTTTC CATAAAATATGTAGTGAGTTACCTGAGGGACCTCTCTGCATTGTTTACATGCACAGTACTGTGCAAAAGGAGGACAATTCACCAGGTGTAACTATCTTGA GGTGGATTTATGAAGAGCTTCCTGCTGGCATCAAGGATAGGCTTCAAACTGTGTACTTCATTCACCCAGGGCTACGCTCAAGGCTTGTCTTTGCAACCCT TGGTCGATTCTTCTTGAGTGGAGGATTATATTGGAAGATCAAGTATGTGAGCCGCCTTCAGTACCTTTGGGAAGACATTAAGAAAGGAGAGATTGAGATC CCTGAATTCGTGCAAAATCATGACAATATTCTTGAGAACAGACCCCTGACAGATTATGGCATCGAACCAGACCCTTTTCACTTAAGTGAGATGCCTATGA CAGCCTACTCATTTGGGAGGTATGAAGAGAGATGGTCATCAAGGGAATTTGCATCTTAG
AA sequence Show only first row Show all	>Potri.006G043166.1 pacid=42769089 polypeptide=Potri.006G043166.1.p locus=Potri.006G043166 ID=Potri.006G043166.1.v4.1 annot-version=v4.1 MATSSSDDFSVFVLASDLGIDARPFLTNKEREQNQENPEPENWHDCCQDFISDEDFSDLDLLQFFTLQGSDKSGNRVFRIVGKYFPAQVVSGERLKKYIF HKICSELPEGPLCIVYMHSTVQKEDNSPGVTILRWIYEELPAGIKDRLQTVYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYVSRLQYLWEDIKKGEIEI PEFVQNHDNILENRPLTDYGIEPDPFHLSEMPMTAYSFGRYEERWSSREFAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10210			SEC14 cytosolic factor family ...		Potri.006G043166 [exp]	0	1
					Potri.006G059400 [exp]	5.65	0.8244
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.004G089500 [exp]	9.94	0.8170
AT1G22160			Protein of unknown function (D...		Potri.005G168900 [exp]	10.24	0.8489
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Potri.011G138200 [exp]	11.22	0.8401
AT3G15358			unknown protein		Potri.011G052900 [exp]	12.16	0.7640
AT4G34540			NmrA-like negative transcripti...		Potri.009G118000 [exp]	15.96	0.8233	PCBERp6
AT2G37975			Yos1-like protein (.1)		Potri.016G109500 [exp]	19.28	0.8203
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	19.77	0.8043
AT1G68220			Protein of unknown function (D...		Potri.008G124100 [exp]	19.89	0.7850
AT1G68300			Adenine nucleotide alpha hydro...		Potri.010G123400 [exp]	24.26	0.8024

Compare expression of checked genes

Potri.006G043166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.