Plant FIBer expression Database

Potri.006G043300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04080 64 / 4e-15 unknown protein
AT2G32210 40 / 9e-06 unknown protein
AT1G56060 39 / 4e-05 unknown protein
AT2G32190 38 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12734 CYSTM Cysteine-rich TM module stress tolerance
Representative CDS sequence
>Potri.006G043300.1 pacid=42769742 polypeptide=Potri.006G043300.1.p locus=Potri.006G043300 ID=Potri.006G043300.1.v4.1 annot-version=v4.1
ATGCATGAGTCTATATATACAACCAACTGTCAAATCTCCATCAAGTATATTTGCATACTCGATACATCAGTTGCTCAAAGAGACAGAACAAGTTCCCTTT
GTTTTTGTGTCAAAATGCCTGGCTTAGAGACTCAAGAGAACAAGCCTCCAGCAGGATACCCAATTGACACTCCCACCACTGGGAAGAAATGCTTCCCTCG
CACAAAAAAGAAGGGAGAAAGAGGCTTTATCGAGGGATGCCTCTTCGCTCTATGTTGCTGTTGGATCTGTGAAATGTGCTGCTAG
AA sequence
>Potri.006G043300.1 pacid=42769742 polypeptide=Potri.006G043300.1.p locus=Potri.006G043300 ID=Potri.006G043300.1.v4.1 annot-version=v4.1
MHESIYTTNCQISIKYICILDTSVAQRDRTSSLCFCVKMPGLETQENKPPAGYPIDTPTTGKKCFPRTKKKGERGFIEGCLFALCCCWICEMCC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04080 unknown protein Potri.006G043300
[exp]
0 1
AT1G10380 Putative membrane lipoprotein ... Potri.007G094800
[exp]
1.00 0.9397
AT3G12090 TET6 tetraspanin6 (.1) Potri.010G220300
[exp]
1.41 0.9368
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Potri.014G106500
[exp]
3.46 0.9213 Pt-RCOMT1.3
AT1G71692 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) Potri.013G102600
[exp]
3.46 0.9133
AT3G20410 CPK9 calmodulin-domain protein kina... Potri.007G042700
[exp]
5.29 0.8782
AT1G60030 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBA... Potri.008G146400
[exp]
5.47 0.9286
AT1G71692 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) Potri.019G076800
[exp]
5.91 0.9100 AGL12.1
Potri.006G225400
[exp]
8.36 0.9154
Potri.008G062950
[exp]
9.21 0.8189
AT1G69970 CLE26 CLAVATA3/ESR-RELATED 26 (.1.2) Potri.010G039800
[exp]
9.79 0.9037

Potri.006G043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.