Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41370 671 / 0 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT3G57130 637 / 0 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT4G19660 156 / 1e-41 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT5G45110 152 / 6e-40 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT1G64280 121 / 2e-29 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT4G26120 119 / 2e-28 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT5G66055 50 / 2e-06 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G19330 50 / 2e-06 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G40160 49 / 4e-06 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G26650 45 / 9e-05 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G040500 [exp] 734 / 0 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.002G056500 [exp] 180 / 4e-50 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1) Potri.015G117200 [exp] 172 / 2e-47 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.012G118500 [exp] 167 / 1e-45 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.005G206100 [exp] 159 / 1e-42 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.012G118300 [exp] 144 / 1e-37 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1) Potri.006G148100 [exp] 137 / 6e-35 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.001G295200 [exp] 56 / 2e-08 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.007G060400 [exp] 51 / 9e-07 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031017 [exp] 625 / 0 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10035413 [exp] 622 / 0 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10018289 [exp] 150 / 3e-39 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 144 / 3e-37 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10038337 [exp] 140 / 6e-36 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1) Lus10018756 [exp] 129 / 1e-31 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10036200 [exp] 106 / 3e-24 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1) Lus10024842 [exp] 81 / 3e-16 AT4G26120 316 / 7e-103 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10010527 [exp] 49 / 6e-06 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10034070 [exp] 49 / 6e-06 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0465 [poplar] [flax] Ank PF11900 [poplar] [flax] DUF3420 Domain of unknown function (DUF3420)
Representative CDS sequence Show only first row Show all	>Potri.006G043400.2 pacid=42769848 polypeptide=Potri.006G043400.2.p locus=Potri.006G043400 ID=Potri.006G043400.2.v4.1 annot-version=v4.1 ATGACTCTTGAAGACTCTCTAAGATCTCTATCTTTAGACTATCTTAACCTTCTTATCAATGGCCAAGCTTTCTCTGATGTAACTTTCAGTGTAGAGGGTC GTTTAGTTCATGCTCACAGGTGTATTTTAGCAGCAAGAAGTTTGTTTTTCAGGAAGTTTTTTTGTGGACCTGATCCACCATCTGGGCTAGACCCATCCGG GTCCAGGATAAACACGGTTGGATCACCAGGTTCGAGGTCTAATGTGATACCAGTTAACTCAGTGGGGTATGAGGTGTTCTTGTTGCTGTTACAGTTCTTG TATAGTGGACAAGTCTCTATTGTGCCACAAAAACATGAGCCAAGGCCTAATTGTGGTGAGAGAGGGTGTTGGCATACACATTGCACCTCAGCCGTTGATC TTGCTCTTGACACACTTGCTGCCGCTAGATACTTTGGTGTTGAACAGCTTGCAATGCTCACTCAGAAGCAATTGGCTAACATGGTAGAGAAGGCCTCAAT TGAAGATGTGATGAAGGTGCTGATAGCTTCAAGAAAACAAGATATGCACCAACTTTGGACCACTTGCTCACATCTTGTGGCCAAATCAGGCCTACCACCA GAAGTCCTAGCTAAACACCTTCCAATTGATGTTGTGGCCAAAATTGAAGAACTACGCCTCAAATCATCTATTGCTCGAAGATCACTAATGCCCCACCATC ACCACCATCTCCACGATCTTACCTCAGCTGCTGATCTCGAGGACCAAAAAATTCGAAGAATGAAAAGGGCGTTAGATTCATCTGATGTTGAACTAGTCAA GCTTATGGTAATGGGAGAAGGCCTCAATCTTGATGAAGCACTGGCTTTACATTATGCTGTCGAGAATTGTAGCCGGGAAGTGGTCAAAGCCTTGCTTGAG CTTGGTGCAGCTAATGTTAATTATCAGGCAGGGCCGGCAGGGAAAACTCCTCTTCACATTGCAGCAGAAATGGTGTCACCAGATATGGTTGCAGTACTTC TTGACCATCATGCTGACCCTAATGTTAGAACCGTTGATGGAGTCACCCCTCTTGACATTCTTAGAACCCTAACCTCAGATTTCTTGTTCAAGGGGGCAGT CCCGGGTCTAGCCCACATGGAGCCCAACAAGCTTAGGCTGTGTCTTGAGCTAGTTCAATCCGCAGCTATGGTTCTTTCACGCGAAGAAGGGAATGTGAAT GCTACTTCAACCCTTATTTATCCATCAATGAGTGATGAACATAATACAAGCAGCAGTGGTAGTAATCTTGCTAACTTGAACCTTGATTCAAGGTTGGTTT ATTTGAATCTTGGAGCTGCTGGTTCAGGTCAAATGGGATCAAGGATGGATGAAGAGGACGATAGTAACCACAACAACCAGAGAGATCATCATGCAATGAG TCGACATGATCCAACAATGTACCACCATCACTCTCATGACTTCTAG
AA sequence Show only first row Show all	>Potri.006G043400.2 pacid=42769848 polypeptide=Potri.006G043400.2.p locus=Potri.006G043400 ID=Potri.006G043400.2.v4.1 annot-version=v4.1 MTLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPSGSRINTVGSPGSRSNVIPVNSVGYEVFLLLLQFL YSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLAMLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPP EVLAKHLPIDVVAKIEELRLKSSIARRSLMPHHHHHLHDLTSAADLEDQKIRRMKRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLE LGAANVNYQAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLAHMEPNKLRLCLELVQSAAMVLSREEGNVN ATSTLIYPSMSDEHNTSSSGSNLANLNLDSRLVYLNLGAAGSGQMGSRMDEEDDSNHNNQRDHHAMSRHDPTMYHHHSHDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Potri.006G043400 [exp]	0	1
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.004G143700 [exp]	1.41	0.7799
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.006G270401 [exp]	4.24	0.7688
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G230800 [exp]	5.65	0.7712
AT1G07175			unknown protein		Potri.001G277600 [exp]	6.48	0.7529
AT2G26270			unknown protein		Potri.006G218800 [exp]	6.70	0.7416
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.019G018600 [exp]	7.21	0.7673
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.004G212200 [exp]	8.06	0.7671
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Potri.006G106800 [exp]	8.94	0.7077
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.011G011101 [exp]	10.58	0.7196
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.009G010800 [exp]	12.00	0.6325

Compare expression of checked genes

Potri.006G043400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.