Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10200 928 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04060 925 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 473 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 471 / 9e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G14430 464 / 4e-157 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G14360 463 / 7e-157 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G39750 444 / 3e-148 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 439 / 1e-146 Putative methyltransferase family protein (.1) AT1G77260 436 / 1e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G19120 407 / 6e-135 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342300 [exp] 468 / 7e-159 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036800 [exp] 458 / 7e-155 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 455 / 2e-153 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 445 / 6e-149 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 428 / 1e-142 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 424 / 6e-141 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075300 [exp] 415 / 3e-138 AT4G00740 965 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 418 / 1e-136 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G184500 [exp] 413 / 1e-134 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038973 [exp] 970 / 0 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 956 / 0 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022291 [exp] 486 / 4e-166 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10003656 [exp] 485 / 2e-165 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10011815 [exp] 473 / 1e-160 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10001013 [exp] 436 / 2e-145 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 434 / 1e-144 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 433 / 1e-144 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 420 / 8e-140 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034729 [exp] 411 / 1e-136 AT1G31850 991 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G043600.1 pacid=42768759 polypeptide=Potri.006G043600.1.p locus=Potri.006G043600 ID=Potri.006G043600.1.v4.1 annot-version=v4.1 ATGGGAGGGTACTCATGGGGGTCAGCCTTTGATTCAAAATCAGGGCAGATGATAATGGTGGCTTTGTTATTAATGGTGGGTTCATTTTACACTGGCACTC TTTTTGGCAATAACAATGCCTCCATTTATGTCTCTCAACTCTCCTCCTCTTCTAATTCCTCTTCATCTCATGGTATTTACACATTCACCAACAAAGTTGC TCTTGCTTATCGACAAACACCAATTGTAATCCCAGAAAGTGGGATGAATGTATGCCCTTTGAAGTTCAACGAGTATATTCCTTGCCATGATGTTGCTTAT GTGAAAACTTTGTTCCCATCCTTGGATCTTTCTAGAAGAGAAGAGCTAGAGAGGCATTGTCCTCCCCTTGAGAAGCGTTTATTTTGCTTGGTGCCACCTC CAGAAGATTATAAATTGCCCATAAAATGGCCAACCAGCAGGGATTATGTGTGGAGAAGCAATGTGAATCATACACATCTTGCTGAAGTCAAAGGAGGACA GAACTGGGTGCATGAGAAAGATCAGCTATGGTGGTTCCCTGGTGGTGGCACTCATTTCAAGCATGGAGCAGCAGATTACATTGAGAGGTTAGGAAATATG ATAACTGATGATACAGGTGATCTGCGTTCAGCTGGGGTTGTTCAAGTTCTGGATGTTGGCTGTGGTGTTGCTAGCTTCTCAGCTTATCTTCTTCCTTTGG ATATCCAAACAATGTCTTTTGCTCCCAGAGATGGTCATGAAAATCAGATTCAGTTTGCTTTAGAACGAGGAATTGGTGCCATGACTGCTGCCATTTCCAC AAAACAGCTACCATACCCCTCTAGCTCTTTTGAGATGGTTCATTGTTCGAGATGTCGTGTTGACTGGCATGAGAATGGTGGTATTTTAATCAAAGAAGTT AATCGTCTTTTGCGAGATAATGGATATTTTGTCTATTCGTCTCCACCTGCTTATAGAAAGGATAAAGATTATCCATTGATTTGGGATAAGTTGGTAAATC TGACTTCTGCTATGTGCTGGAAACTCATTGCTCGAAAAGTTCAAACTGCAATTTGGGTCAAACAAGAAAATGAGTCATGCCTCCTGCACAATGCAGAGAT GAAACAAATAAACATCTGTGACACTGTAGATGACATGAAACCATCATGGAAAACACCACTGAGGAACTGCATACCAAGAAGTGCACCAACTAATCCTCAG AAACTGCCTCCCAGACCAGAACGTCTTTCTGTATATTCAAAGAGTCTCAGCAAAATTGGTATCACTGAAGAAGAGTTTTCTTCAGATGCCATATTCTGGA AAAATCAAGCTGGCCATTACTGGAAGCTGATGAATATCAATGAGACGGATATACGAAATGTCATGGACATGAATGCTTTTATTGGCGGATTTGCTGTTGC TTTGAACTCGCTGCCTGTTTGGGTGATGAATATAGTTCCCATGAGCATGAATAATACCTTGTCAGCTATTTATGACAGGGGTCTCATAGGAGCTTTTCAT GATTGGTGTGAGCCATTCTCAACATATCCACGAACATATGATTTATTGCATGCCAATCATCTCTTCACACACTACAAAGACCATGGAGAAGGTTGCCTGC TAGAGGATATCATGCTGGAGATGGACCGTATTATCCGACCTCAGGGATTTATTATCATCAGAGATGAGGAATCGTTTACATCAAGAGTCCAGCATTTAGC TCCAAAGTTTCTGTGGGAGGTCGAATCACATGTTCTGGAAAACAAAGGAAAGAAGACTGAAACTGTACTAATATGCAGAAAGAAGTTCTGGGCATTGGTA TAA
AA sequence Show only first row Show all	>Potri.006G043600.1 pacid=42768759 polypeptide=Potri.006G043600.1.p locus=Potri.006G043600 ID=Potri.006G043600.1.v4.1 annot-version=v4.1 MGGYSWGSAFDSKSGQMIMVALLLMVGSFYTGTLFGNNNASIYVSQLSSSSNSSSSHGIYTFTNKVALAYRQTPIVIPESGMNVCPLKFNEYIPCHDVAY VKTLFPSLDLSRREELERHCPPLEKRLFCLVPPPEDYKLPIKWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEKDQLWWFPGGGTHFKHGAADYIERLGNM ITDDTGDLRSAGVVQVLDVGCGVASFSAYLLPLDIQTMSFAPRDGHENQIQFALERGIGAMTAAISTKQLPYPSSSFEMVHCSRCRVDWHENGGILIKEV NRLLRDNGYFVYSSPPAYRKDKDYPLIWDKLVNLTSAMCWKLIARKVQTAIWVKQENESCLLHNAEMKQINICDTVDDMKPSWKTPLRNCIPRSAPTNPQ KLPPRPERLSVYSKSLSKIGITEEEFSSDAIFWKNQAGHYWKLMNINETDIRNVMDMNAFIGGFAVALNSLPVWVMNIVPMSMNNTLSAIYDRGLIGAFH DWCEPFSTYPRTYDLLHANHLFTHYKDHGEGCLLEDIMLEMDRIIRPQGFIIIRDEESFTSRVQHLAPKFLWEVESHVLENKGKKTETVLICRKKFWALV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10200			S-adenosyl-L-methionine-depend...		Potri.006G043600 [exp]	0	1
AT2G32070			Polynucleotidyl transferase, r...		Potri.006G187200 [exp]	1.00	0.8227
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Potri.013G087200 [exp]	5.29	0.7175	CLV2.1
AT1G24095			Putative thiol-disulphide oxid...		Potri.008G147000 [exp]	10.81	0.6833
AT4G22580			Exostosin family protein (.1)		Potri.001G120800 [exp]	13.26	0.6551
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.015G013900 [exp]	14.21	0.7711
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.016G003400 [exp]	15.09	0.7470
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	15.29	0.6624
AT1G35780			unknown protein		Potri.002G095300 [exp]	18.16	0.7361
AT4G27745			Yippee family putative zinc-bi...		Potri.001G085400 [exp]	18.33	0.7136
AT5G19130			GPI transamidase component fam...		Potri.001G345200 [exp]	19.33	0.6933

Compare expression of checked genes

Potri.006G043600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.