Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04050 743 / 0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) AT1G74350 206 / 2e-56 Intron maturase, type II family protein (.1) ATMG00520 85 / 1e-16 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063750 [exp] 236 / 2e-66 AT1G74350 877 / 0.0 Intron maturase, type II family protein (.1) Potri.007G062302 [exp] 100 / 2e-21 ATMG00520 1095 / 0.0 Intron maturase, type II family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038971 [exp] 1035 / 0 AT5G04050 704 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10027263 [exp] 1023 / 0 AT5G04050 690 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10021359 [exp] 243 / 1e-68 AT1G74350 838 / 0.0 Intron maturase, type II family protein (.1) Lus10036278 [exp] 194 / 3e-58 AT5G04050 87 / 8e-21 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10017036 [exp] 88 / 1e-18 AT1G74350 200 / 1e-58 Intron maturase, type II family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [poplar] [flax] RdRP PF00078 [poplar] [flax] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) CL0359 [poplar] [flax] Intron-mat_II PF01348 [poplar] [flax] Intron_maturas2 Type II intron maturase
Representative CDS sequence Show only first row Show all	>Potri.006G043650.1 pacid=42767807 polypeptide=Potri.006G043650.1.p locus=Potri.006G043650 ID=Potri.006G043650.1.v4.1 annot-version=v4.1 ATGCTTATTGTAAACCTCAAGAAAGTTACAACAACATTTGATCTCAGACTTTCATCTCCAACAACCTCTTCGCTTAAACTCCTTTATTCTACACTAACCT TAAACCCTAACACCATCCAGAATCCTAAGACCCCACCAATCCAAAACCCTACAAAACCCCTAACAACACCCCAGCTCAAAACCCTAGTCCTTTCCCAATA CTCCCATGGAAAGTTCTCCAATCTTATCCAAAACGTCGTTGGTTTACCTTCAGTCCTCCTCACTGCCTCTCAGAACCTCATTACCCACCACAGCAATGAT GGGCTTAACTGCACTGAGTCGAACGAGTTGGCCGAGTCAACTCAGCCGAACCTCTCTCTTTACCACTCCGTTTCGAAGCGTTTCTCAATTGAAGAAATGG GTCGTGAGATTTTTGAGAATCGGTTTGATATTGAGGCTCATTGTGTCAAAATGAGTGATGAAGGTGAGACCTTGGTTCTGCCAAATTTGAAACTTAAGGT TTTTATTGAAGCTATTAGGATTGTTTTAGAAATTGTTTATGATGATCGTTTTGTCACGTTTTCTTATGGTGGACGTGTTAATATGGGGCGGCATACGGCT ATAAGGTACCTAAAGAATTCAGTGAATAATCCAAGTTGGTGGTTTAGTGTTTGTTTTAATGATGTTAAGTTTGATAAAAGAAAAGTAGATAAGTTGTACT TGTTTATAGAGGAGAAAATTAAAGATGGGATTTTGATTGATGTGATAAAGAGGTTGTTTGATTGTGGTGTGTTGAAGATTGAATTAGGTAGGTGTTATTT AGCGAAGGGGTTGCCTCAAGAATGCGGGTTGTGTTCAATATTGATTAATGTTTATTTCAATGGATTTGATAGAGAAATTCAAGAGATGCGTTTAAGAATG AGTAAAGAGAATCCTAAACTCGATCAGAATGAGATCGGTGAAGGGTCTAGTTCTTCATATAAGCCGCTGAAGATGTATGCTGTTAGGTACTTGGATGAGA TATTAGTGATTACGTCAGGTTCGAAGATGTTGACGATGAATCTGAAGAAATGGGTTTTGAAATTTCTGGAAGGCGAATTGGAGTTGAATGTGGATAGAGT AAAGACAGCTATTCATAGTGCGGTTTCTGAGAAAATTGATTTCCTAGGGATGGAATTGCAGGCTGTCCCACCATCAGTCTTGCATCCACCAATGTCGGAG AAAGCCATTAGAGCAAGAAAAAAATATCTTAGACAGAAGGAAGTTAAGGCTTTGGAATTGAAAAATGCTCGGGAGAGGAATAGGAAGAAATTGGGTTTGA AATTATTGAGTCATGTTTTTAAAAAGTCGAAGCAGAGTGATGGGTTCAAATTTGATTTTCAAATTGAGAATGAAGTTCGAGAAATCTTTCAAACTTGGGC AGATGAAGTGGTTCAAGAATTTTTAGGCTCCCTTGAAGAGCGTTGGACATGGCATCGAATGCTCAGTGCTGGTGATTTCCTCTCCCTGAGGCACATCAGA GACCAATTGCCACAAGAGCTGGTCGATTCTTATGACAAGTTCCAAGAGCAGGTACACAAGCATCTGTCACCAGTCAAGGCTAGAAAGGCATTGGAGGAAG AAGGAAGGAGAATCAAGGAAGAGGAGGAAATGAAGTATGCTGAGAGAACCGTGGATGATCTGACAAAACTGTGCATGAAAGTCTCTGCACCTATTGAACT TGTAAGGAAGGCTGTTAAGATGGCTGGGTTTACGAATAAAATGGGCCGTCCCCGGCCTATCAGCATTCTCACTTCTCTGGAAGATGCTGATATTATCAAG TGGTATGCAGGGGTAGGGAGAAGATGGCTTGATTTCTTTTGCTGCTGCCACAACTTGAAGATGGTGAAAACTGTTGTAAGTTATCATCTGAGGTTCTCTT GTATTTTGACGTTGGCAGAAAAGCATGAAGCAACAAAAATTGAATGCATTAGGCATTACACTAAAGATTTGAAAGTCCCAGATATGAATGGAAGTGAAGA GGTTCACTTTCCCACAGAAAAGGAGGTAAAGATGATGGGGGATAAAAATCTTTCAGATCCAACACCTGTAGATGGGGCTTTATCTTTGCTACTGATCAGA CTGGCTTCTGATGAGCCATCACATTCCTGTGTCGGTCATTTTTGTGACAAAACTGATACTGTTATGTATCGAGTGCGGTTGCTGCAGAACATTTTAAATG TGAACCCAGCCGATGAAGACAAGTGGGTTCCAAGGATGAGTGCAATTCATGAAAGTCTGAATCAGATGTGTTTCCCTCTTTGTTCTGATCACAAAAGTGA CTTGTATACTGGGAAAATCACCCTGCAGGATGTTGACTGCACTTCATATGTGAATGTTGACTGA
AA sequence Show only first row Show all	>Potri.006G043650.1 pacid=42767807 polypeptide=Potri.006G043650.1.p locus=Potri.006G043650 ID=Potri.006G043650.1.v4.1 annot-version=v4.1 MLIVNLKKVTTTFDLRLSSPTTSSLKLLYSTLTLNPNTIQNPKTPPIQNPTKPLTTPQLKTLVLSQYSHGKFSNLIQNVVGLPSVLLTASQNLITHHSND GLNCTESNELAESTQPNLSLYHSVSKRFSIEEMGREIFENRFDIEAHCVKMSDEGETLVLPNLKLKVFIEAIRIVLEIVYDDRFVTFSYGGRVNMGRHTA IRYLKNSVNNPSWWFSVCFNDVKFDKRKVDKLYLFIEEKIKDGILIDVIKRLFDCGVLKIELGRCYLAKGLPQECGLCSILINVYFNGFDREIQEMRLRM SKENPKLDQNEIGEGSSSSYKPLKMYAVRYLDEILVITSGSKMLTMNLKKWVLKFLEGELELNVDRVKTAIHSAVSEKIDFLGMELQAVPPSVLHPPMSE KAIRARKKYLRQKEVKALELKNARERNRKKLGLKLLSHVFKKSKQSDGFKFDFQIENEVREIFQTWADEVVQEFLGSLEERWTWHRMLSAGDFLSLRHIR DQLPQELVDSYDKFQEQVHKHLSPVKARKALEEEGRRIKEEEEMKYAERTVDDLTKLCMKVSAPIELVRKAVKMAGFTNKMGRPRPISILTSLEDADIIK WYAGVGRRWLDFFCCCHNLKMVKTVVSYHLRFSCILTLAEKHEATKIECIRHYTKDLKVPDMNGSEEVHFPTEKEVKMMGDKNLSDPTPVDGALSLLLIR LASDEPSHSCVGHFCDKTDTVMYRVRLLQNILNVNPADEDKWVPRMSAIHESLNQMCFPLCSDHKSDLYTGKITLQDVDCTSYVNVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04050			RNA-directed DNA polymerase (r...		Potri.006G043650 [exp]	0	1
AT1G29320			Transducin/WD40 repeat-like su...		Potri.012G095100 [exp]	2.00	0.9091
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G120900 [exp]	2.44	0.9023
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	3.00	0.9106
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132700 [exp]	3.16	0.8804
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	3.16	0.9139
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	4.69	0.9121
AT3G47840			Tetratricopeptide repeat (TPR)...		Potri.007G021700 [exp]	5.00	0.9076
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	6.00	0.8784
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	8.77	0.8937
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	15.23	0.8934

Compare expression of checked genes

Potri.006G043650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.