Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10190 176 / 2e-55 Calcium-binding EF-hand family protein (.1) AT2G41410 176 / 2e-55 Calcium-binding EF-hand family protein (.1) AT1G24620 89 / 8e-22 EF hand calcium-binding protein family (.1) AT1G66400 82 / 1e-19 CML23 calmodulin like 23 (.1) AT1G18210 76 / 3e-17 Calcium-binding EF-hand family protein (.1.2) AT2G15680 75 / 1e-16 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT3G07490 74 / 1e-16 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT3G59440 74 / 5e-16 Calcium-binding EF-hand family protein (.1) AT1G73630 72 / 5e-16 EF hand calcium-binding protein family (.1) AT1G21550 72 / 6e-16 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G040900 [exp] 308 / 9e-108 AT3G10190 175 / 2e-55 Calcium-binding EF-hand family protein (.1) Potri.014G070700 [exp] 87 / 5e-21 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.004G089400 [exp] 80 / 1e-18 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.008G134300 [exp] 79 / 5e-18 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.017G029700 [exp] 79 / 8e-18 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.010G107100 [exp] 76 / 5e-17 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.005G215700 [exp] 75 / 5e-17 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.015G039500 [exp] 75 / 9e-17 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.012G041000 [exp] 73 / 2e-16 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038970 [exp] 185 / 3e-59 AT2G41410 166 / 7e-52 Calcium-binding EF-hand family protein (.1) Lus10027261 [exp] 184 / 9e-59 AT2G41410 168 / 2e-52 Calcium-binding EF-hand family protein (.1) Lus10001775 [exp] 84 / 2e-20 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10014050 [exp] 82 / 4e-19 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10019863 [exp] 80 / 2e-18 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10018012 [exp] 76 / 7e-17 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10004330 [exp] 74 / 1e-16 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10009176 [exp] 73 / 4e-16 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10024830 [exp] 73 / 4e-16 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10027701 [exp] 74 / 9e-16 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13405 [poplar] [flax] EF-hand_6 EF-hand domain CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.006G043700.1 pacid=42770366 polypeptide=Potri.006G043700.1.p locus=Potri.006G043700 ID=Potri.006G043700.1.v4.1 annot-version=v4.1 ATGAAATTCATCAAAAAACTCAGCCAGAAAATCTTGTCCGCCTCCAGAAAAGACCGATCCACGGTATCCAGATCAGATCCATCATCGTTTGGCTCAGGTA CCGCCTCCTCCTCCTCCTCCGCCTCCTCCTCCGCGTCCACCTCCGCTGCAGCCAAGACCGGTTTTCGGACTCCTACCAGCATTTTGCCACAAGTATCGGG TGACTGGACCGATATCTCGGCCGATCTTTATTTCGAGTTGACCCAGGCCTTTAAGCTAATTGACAGGGATAACGACGGCCTAGTCTCAAGGAATGAGCTG GAGGCTCTTCTTACCCGGCTTGGAGCCGAGCCGCCGAGCAGCGAGGAGATGGCCGTTATTTTAGGCGAGGTTGACCATATTAGTGTCGAGGCGCTTGCGA GTCGTCTCGGCACGGCTTGCGAGCCGGCTGGGGACGATGAGCTGAGAGATGCCTTCGTGTTTTTTGACTCGGATCGTGACGGGAAGATAACGGCAGACGA ATTATTAAACGTTTACAAGGCTTTTGGCGACGAAAAGTGCACGTTAGAGGATTGCAGGCGTATGATAGCAGTGGTTGATAAGAATGGAGATGGGTTTGTG TGCTTTGAGGACTTTTGTCGTATGATGGAGCTGCGGAGATGA
AA sequence Show only first row Show all	>Potri.006G043700.1 pacid=42770366 polypeptide=Potri.006G043700.1.p locus=Potri.006G043700 ID=Potri.006G043700.1.v4.1 annot-version=v4.1 MKFIKKLSQKILSASRKDRSTVSRSDPSSFGSGTASSSSSASSSASTSAAAKTGFRTPTSILPQVSGDWTDISADLYFELTQAFKLIDRDNDGLVSRNEL EALLTRLGAEPPSSEEMAVILGEVDHISVEALASRLGTACEPAGDDELRDAFVFFDSDRDGKITADELLNVYKAFGDEKCTLEDCRRMIAVVDKNGDGFV CFEDFCRMMELRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41410			Calcium-binding EF-hand family...		Potri.006G043700 [exp]	0	1
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Potri.001G397200 [exp]	4.35	0.8931
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.012G145800 [exp]	5.91	0.8639
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.009G161600 [exp]	6.48	0.8701
AT4G02040			unknown protein		Potri.008G198000 [exp]	9.53	0.8412
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.007G113000 [exp]	12.48	0.8680
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.004G200400 [exp]	12.80	0.8666
AT5G66720			Protein phosphatase 2C family ...		Potri.001G381000 [exp]	15.49	0.8328
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.014G087700 [exp]	18.33	0.8262	Pt-BRH1.1
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.008G069400 [exp]	18.49	0.8586
AT4G29905			unknown protein		Potri.008G007800 [exp]	19.79	0.7649

Compare expression of checked genes

Potri.006G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.