Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04040 1205 / 0 SDP1 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) AT3G57140 1071 / 0 SDP1-LIKE sugar-dependent 1-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041000 [exp] 1503 / 0 AT5G04040 1176 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038968 [exp] 1245 / 0 AT5G04040 1224 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) Lus10027259 [exp] 1168 / 0 AT5G04040 1168 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase CL0323 [poplar] [flax] PF11815 [poplar] [flax] DUF3336 Domain of unknown function (DUF3336)
Representative CDS sequence Show only first row Show all	>Potri.006G043800.1 pacid=42769670 polypeptide=Potri.006G043800.1.p locus=Potri.006G043800 ID=Potri.006G043800.1.v4.1 annot-version=v4.1 ATGGATATAAGCAATGAGGCCAGTGTTGACCCTTTCAAAATCGGACCTTCATCGATCATTGGTAGGACAATTGCTTTCAGAGTTCTGTTCTGTAAATCAA TCTCACATTTGAGGCAAAAAATCTTTCATGTGTTGTTGAATTACATTTATAGAGTTGGTGAATTTGTGGCGCCTATGTTATCATGGTTTCATCCAAGGAA TCCACAAGGGATATTGGCCATGATGACGATAATTGCATTTTTATTGAAAAGATATGCGAATGTTAAATTGAGGGCCGAAACAGCGTATAGGAGGAAATTT TGGAGGAATACGATGAGAACTGCGTTGACATACGAGGAGTGGTTTCATGCTGCTAAAATGCTTGATAAAGAGACCCCAAAGATGCATGAATGTGATCTCT ATGATGAAGAACTAGTCAGGAACAAGCTTCAAGAGCTCCACCACCGTCGCCAAGAGGGATGTCTTAGAGATATAATCTTTTTTATGAGAGCCGATCTTGT AAGAAATCTCGGTAATATGTGTAACCCTGAGCTTCACAAGGGTAGGCTTCAAGTGCCCAAGCTCATAAAGGAATATATTGACGAGGTCTCAACTCAGTTA AGAATGGTTTGTGACTCCGATTCAGAGGAGCTTTCGTTGGAAGAAAAGCTTGCTTTCATGCATGAAACGAGACATGCTTTTGGGAGAACAGCTTTGCTTC TGAGTGGAGGTGCTTCACTTGGAGCGTTTCATGTGGGTGTGGTTAAAACACTGGTGGAGCACAAGCTTATGCCCCGAATAATTGCTGGTTCTAGTGTGGG GTCAATTATGTGTTCAGTTGTTGCCACCAGATCGTGGCCAGAGCTGCAAAGTTTTTTTGAGGATTCCTGGCACTCGTTTCAGTTTTTTGACCAATTGGGT GGAATTTTCACAGTTGTGAAGAGGGTCATGAGACAAGGAGCTGTTCATGAAATCCGGCAGTTGCAATGGATGTTAAGGCATCTTACAAGTAATCTTACAT TTCAAGAAGCTTATGACATGACTGGTCGAATTCTTGGGATCACAGTTTGCTCACCTAGGAAGCATGAGCCCCCTAGATGCCTTAATTACCTTACTTCCCC TCATGTTGTTATATGGAGTGCAGTCACTGCTTCTTGTGCTTTTCCTGGCCTTTTTGAAGCCCAGGAACTAATGGCAAAGGACAGAAGTGGGGAACTTGTG CCTTATCACCCACCCTTTAATCTGGATCCTGAAGAAGGATCTGATGCACCTATGCGTAGGTGGAGGGATGGTAGCCTGGAGATTGATTTACCAATGATAC AATTGAAGGAACTATTCAATGTCAATCATTTTATTGTAAGTCAAGCGAATCCTCACATTGCTCCATTGTTGAGACTGAAGGATATAGTCAGGGCATATGG GGGTAGCTTTGCTGCCAAGCTTGCTCATCTCGCTGAGATGGAGGTAAAACATAGATGCAATCAGGTATTGGAACTTGGTTTTCCATTAGGTGGACTTGCC AAGCTTTTTGCTCAAGAATGGGAAGGTGATGTTACTGTTGTTATGCCTGCCACACTCGCTCAGTACTCAAAAATTATTCAAAACCCAAATCACTTGGAGC TTCAAAAGGCATCAAACCAAGGCAGAAGGTGCACATGGGAGAAGCTTTCTGCCATAAAAGCTAATTGTGGTATTGAGCTTGCTCTTGATGAGTGTGTTTC TGTTCTGAACCACATGCGTAGACTCAAAAGGAGTGCTGAGAGAGCTGCTGCTGCTTCTCATGGCCAAGCAAGCTCTGCGAGCACATTGAGATTTAGTGCT TCAAAAAGAATTCCTTCTTGGAATTGCATCGCAAGAGAAAACTCAACAGGCTCACTTGAAGAAGACTTCCTTGCTGATGTTGCTTCAACATTCCATCAAG GAGTTGGTGTGGCTGGAGGAACTTCTACTGGTAGGAATTTGAGAACACAACGCAACCTACATCATGATGGAAGTGATAGTGAATCTGAAAGTGTAGATTT GAATTCTTGGACAAGATCTGGCGGGCCTTTGATGAGGACTGCTTCTGCAAATAAGTTCATTGACTTTGTCCAAAGTCTGGATGTTGATTCTGAGCTAAGG AAAGGCTTCATGGCTCATCCTAACTCGCCTGGGGCTCAGATGGGAGGCAGGGATCCATATAATCAGATCTCAAGAGTGACAACCCCAGATAGAAATTCAG AAAGTGAGTTTGATCAGAGAGATTTTAGCAATAGAAATTCTACTGGTGGTTCTAGCATTACAGTCACCGAAGGAGATTTTTTGCAGCCTGAAAGAATCCA TAACGGGTTTGTGCTGAATATTGTAAAGAAAGAAGATTTGGCACATCCCAATAGGATCCATGATTTGGAGAATTACAATAGTGAAGTTCCTGAATGTGTT CAGCTTGATTGTCCTGAAAAGGACATGGATGCTAGCTCAGAATCGGACTATGCTGCAGAGGAAGACGACTCCCCTGCAACAGATTCCTTGCATAAATCAG CTTCCACTCTTGATCACACAGATGATTCTGTCGTTCATGACATTCAGGAGAAGCATGTCGTGGATGGTTAA
AA sequence Show only first row Show all	>Potri.006G043800.1 pacid=42769670 polypeptide=Potri.006G043800.1.p locus=Potri.006G043800 ID=Potri.006G043800.1.v4.1 annot-version=v4.1 MDISNEASVDPFKIGPSSIIGRTIAFRVLFCKSISHLRQKIFHVLLNYIYRVGEFVAPMLSWFHPRNPQGILAMMTIIAFLLKRYANVKLRAETAYRRKF WRNTMRTALTYEEWFHAAKMLDKETPKMHECDLYDEELVRNKLQELHHRRQEGCLRDIIFFMRADLVRNLGNMCNPELHKGRLQVPKLIKEYIDEVSTQL RMVCDSDSEELSLEEKLAFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVEHKLMPRIIAGSSVGSIMCSVVATRSWPELQSFFEDSWHSFQFFDQLG GIFTVVKRVMRQGAVHEIRQLQWMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGELV PYHPPFNLDPEEGSDAPMRRWRDGSLEIDLPMIQLKELFNVNHFIVSQANPHIAPLLRLKDIVRAYGGSFAAKLAHLAEMEVKHRCNQVLELGFPLGGLA KLFAQEWEGDVTVVMPATLAQYSKIIQNPNHLELQKASNQGRRCTWEKLSAIKANCGIELALDECVSVLNHMRRLKRSAERAAAASHGQASSASTLRFSA SKRIPSWNCIARENSTGSLEEDFLADVASTFHQGVGVAGGTSTGRNLRTQRNLHHDGSDSESESVDLNSWTRSGGPLMRTASANKFIDFVQSLDVDSELR KGFMAHPNSPGAQMGGRDPYNQISRVTTPDRNSESEFDQRDFSNRNSTGGSSITVTEGDFLQPERIHNGFVLNIVKKEDLAHPNRIHDLENYNSEVPECV QLDCPEKDMDASSESDYAAEEDDSPATDSLHKSASTLDHTDDSVVHDIQEKHVVDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.006G043800 [exp]	0	1
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.002G226600 [exp]	6.92	0.7720	NFR1.1
AT5G33280			Voltage-gated chloride channel...		Potri.006G064000 [exp]	7.34	0.8020
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.013G123500 [exp]	8.36	0.7899
AT5G21940			unknown protein		Potri.018G048100 [exp]	9.79	0.7948
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G084400 [exp]	11.74	0.8147
AT1G24440			RING/U-box superfamily protein...		Potri.008G181300 [exp]	12.12	0.7748
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Potri.013G021300 [exp]	14.49	0.7682
AT1G67480			Galactose oxidase/kelch repeat...		Potri.010G059200 [exp]	18.02	0.7847
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.003G052800 [exp]	18.33	0.8005
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.010G104500 [exp]	18.97	0.8070

Compare expression of checked genes

Potri.006G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.