Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04020 146 / 5e-35 calmodulin binding (.1) AT2G38800 108 / 4e-24 Plant calmodulin-binding protein-related (.1) AT3G54570 85 / 9e-17 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041100 [exp] 1664 / 0 AT5G04020 114 / 4e-25 calmodulin binding (.1) Potri.001G024100 [exp] 147 / 1e-35 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1) Potri.003G201400 [exp] 132 / 7e-31 AT2G38800 145 / 4e-36 Plant calmodulin-binding protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031023 [exp] 192 / 9e-50 AT5G04020 127 / 9e-30 calmodulin binding (.1) Lus10035417 [exp] 187 / 4e-48 AT5G04020 129 / 3e-30 calmodulin binding (.1) Lus10024175 [exp] 108 / 9e-24 AT3G54570 119 / 6e-28 Plant calmodulin-binding protein-related (.1) Lus10039544 [exp] 107 / 2e-23 AT3G54570 121 / 9e-29 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [poplar] [flax] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G043900.1 pacid=42768336 polypeptide=Potri.006G043900.1.p locus=Potri.006G043900 ID=Potri.006G043900.1.v4.1 annot-version=v4.1 ATGATGCCTACCAAGCTTGGAGCTGAATTTGACTCTGATTATTCCTTCTCATCTGAAAGTTCATGTATGAGCAGCAAATCGTCATCATCCTCATCATGTT ACCAGAAAGAAGATAATAGCTACGAGGCAGGAAGAGAGCTGAAGAGGAAAGTAAAGAAGTTAAGATCATCCAAGCTTGCAAGATTGCCAAGCTTGAAGCT CATCACAAGACAAGCCAAAATTCAATCTGATGATGTTTCTGTCCTGTCTAGTGACGCAGCAAGATCACAACATTCAGGCATGTCACCAAATTATATGAGG ACCACCACTTCTTCAAATGCAAAGAAAGAGAATTTGCAGAAATCAGCAAGAACTTTGGCAAGGCGATCTAGTTTTAAGCCAGCAAAGAGTTTGCCAAGGT TGTCTAGTATAAAATTCAGGAGACCTTTGATAAGGAAATCTTCTGGAGGAACTGACCTGAAGAAAAAAATGAAGAGGTCAAGATCAATCAAGCTTGCCGA CCGATCTTCCATTGTTTTTGCAAGTGATGCGGATGCATCGGTGGATTATTTGGAGGCAAAAAACTGTTCTGATGGGAGGAATGTTCATTTTCAGGCAAGT CCCCATCTTGAATCTACTTTGATTAGCAACAATGAGGATAGGAAAAAATCAAGTAATTCAAAGCAGAATTTAGCTTCTTCTGGTAACAACTCTATGAGAG TCATGACAAGAACTTCCACATTGAGACCTGTAAGGATCTTCACAAAAGTGGCGAGCTTCAGAACAAAGCGTTCTCAAATTCCAGACTCAAGCATCCAAAA AACCACCTGTTCTTCGGCCATCAAAGACTCCAAGTTTCCAAATCATCTTGAGCTGCAACCAGGAGGAAGTGAATCTGAAGGAAATTCGATCATGAAGGTT TGTCCATATAGTTACTGCTCCCTTCATGACCATCGCCATTCCGATGTACCTCCGCTTAAACGCTTTGTATCAATGAGGCGACGTCTGTTAAAGACCCAAA AAAGCATGAAATCAGAAAGTCAATCCTCTCGAAGAGCGAAGCATTCTGGTATTTCAAAGAAGGGAACACAGACAAGTCAATCGGCATCTTGTGGAGACTT GGCAGTTCTAGAAACAGCCCATGACAAGATGGCTGTCTCATCGTCCATTGGCAGAAAAGCTGGACAAAGAGCTGAGTCAAAGAGTGCTCACGGAGGAGAT GAAAAAGATTACAGAGATGTAATAAGTGTCACTGAGAACCAAACTCTTCCAGAAGAAGCTGATGAAGGTAGAATTGCTAGTTTGAACTTGAATGTATTTA AAGGTGATTCACAATTGAACACTGCAAAGGAAAATGCTTCAACAAGTGTAGCTGATGAACGAGTCAATAAACCCAGAAGCCTAAGCCTGAATAGATTCGT GGAGTCCACAGAAATCGACAATAAGGTCTCTTCTGTTTCCATTGGTAAACCATCGCAAGAGGAAACAGCATCCTGTGAAGAAAAGAACCAAGATGCTGTG CAAGATTATCGGTTCCTTGGTGCAGATTCTGAGCATGATTATACTGTGGATACAGGCCACAGAAATCCATGGGAGAAACAGAAGCCCATGGGATTGTGGA ACCTAATATATCAGCATATGGCATCAGGTGTTGCTGCAGAAGATGGAACCCGACCACATCTTAATAAAGAAGCCAAGGAAGAAGAAGAAGAAGAGAATAC ATTGCCTGGCATGAGCAAATCTGGTTCTTTTCAGGATTTTTCTAGTACAGATCACAGCATTGGTGAGGAATATCATGATGAACGCAGCCAGAAGATTCAG CAATACCAATGTGATGCCATTAAGTTGGTGCAAGAAGCATTTGATAGAATACTCTCAGAAATTCCAGACCAGCCAACTGATGATCTATCAGTTACTAGTG ACACAACTTCAGACAAGAAGATTGCAGAAAACGATCATGGTGAAGACAGACAATTGAACATCTCAACTTCCTATGATTCATGTGGAGACAGCATGGTGCA GGAACCAGAAGAAACGAGGCTCCAAGCTGATAATGCCTTCCAAAAAGAGAAGGCAGAATCAAGTGTGGAAAGCAAGTCTAACCAGCAAACGCCCAAGAGC TGGAGTAATCTGAGAAAAATACTCATCCTCAAGAGATTCATCAAGGCATTGGAAAAGGTGAGGAACTTCAGTCCACAGAAGCCACGGAATCTAAATGTAG AGGCTGACCCAGAAGCAGAAAAGGTTCATCTGCGTCATCAAACCATGGGAGAGAGAAAAAATTCTGAGGAATGGATGCTTGATCATGCACTTCAACAGGT TATTTCTACACTAGCCCCAGCTCAAAAGAGAAAGGTAGCTCTGCTTGTACAAGCATTTGAGAAAGTCACCCTGCCTACAGAAGTTGGTACTTCGCCAAGG TCCAACATAGAAGCTTCTTCTCAAACAACTCCAGTTAAAACCAGCACCGGTGCCTCTGACTGCAAAGGGTCTAGAGAAGGAAAAGAAACTATATTTGGAA TCACTCTTTGTAAGACATCAAGCCTTGAAACAAGCTTCAAACAGAATCAAGACCAGGCCAGTGACTTCTACAAAGTGGATGAGCACATTCAAGGTTCTTG TTCTGAGGTGAAAGAAACAAGTTTAAAAAATGGTTGCATTCATCTAGCATCGAGTCCTTCGTCCACAAAGAACACTGCTGCAGAGTTGAAGAATGAATTT GTTGCTTTCAATCTTGGTAATGGTGAAACTAATTCCACTGTTAAAGATGATGAGCCTGATTTCGTCAGCCACTGTTTGGTGGAGGATACAGATTCCAACT TATGTGACAATCCATTGCCAAGGTCAGCTGATGTTCTACGAACTTCTAGTGAGGAACTTGTGATATATGGGGAAACCCTCCAAGAGGATGCCAAAGAAGC AAGTGCAGTTTCTGCCTCAGAGGTACATGATCGTAATTTTGGATTAAACGGCCAAAAGTCAGACATCAATAACAAAAACAACGGAACTTGTGATGAATCA GATGAACCCAAAAGCCAAACCCTAAAAGATTACGAGGGTTCCATTGCAAATACCGATGTGGTTTCTTCATCTTCAGTTTCTGTGCCACTAAAGGAATCAT CTGAAGTTGCTGGAGAAGAAAATAAGCTCCTCCAAGGATCCACCCTGCTTGACGATTCAGAACCAGGTTGTACAACTGATGCTGCACATGAAAAGCAGAA ACATATGAAGTTCTGGTTCTTGATATATAAGCACATGGTATCAGGCAATGCGACATTACTTGAGGGAGCAGAGAATGAAGAACAAGGGGATGGTGGCAAC CAATTGGTTGAAATGAACACATTGGATAATGATGACGCGGGCAACCAAAAGATTAAACTCCAGCAGATTGAAACCATTAGACTGGTAGAAGAAGCAATTG ATCAAATCCCTCTTCCAGAATTTCAAGAAGACTCACCAGATGATCAATCAGTTGCCTGCGACATAATTCAAGACCAGGACCAGGAGCACACAGAAAAGAA AGCTGGGGAAGGGGAGGAACCTTTCATCTCATCTTCCTTTGAGGACACCAATGAAAGCTTTGAAAAATCTGACAGCACAAAAGTAGAGGAGAGCACCACA CTGTATCAACAAGAACAGCAGCTCAATTCTGATAACATCAGTGCACAAGAAAAGGCAAAACCAATACCACCAGCAGGAAACAAGCCAAAGCCAGCTATGC AAAACTGGAGCAATCTGAAAAAGGTGATCCTCCTCAAGAGATTCGTTAAGGCATTGGAAAAGGTGAAAAAATTCAATCCAAGGGAGCCACGATTTCTGCC CTTGGACCCTGCAAGTGAAGCTGAAAAGGTTCATTTAAGGCACCAAGACACGGGTGATAGGAAAAATGCTGATGAATGGATGCTTGATTATACACTTCAA CAGGTTGTTGCTAAACTGACTCCGGCTCGGAAAAGAAAAGTGTCATTGCTTGTAGAAGCCTTTGAGGCAGTCACCCCTATTGGAAGTTGA
AA sequence Show only first row Show all	>Potri.006G043900.1 pacid=42768336 polypeptide=Potri.006G043900.1.p locus=Potri.006G043900 ID=Potri.006G043900.1.v4.1 annot-version=v4.1 MMPTKLGAEFDSDYSFSSESSCMSSKSSSSSSCYQKEDNSYEAGRELKRKVKKLRSSKLARLPSLKLITRQAKIQSDDVSVLSSDAARSQHSGMSPNYMR TTTSSNAKKENLQKSARTLARRSSFKPAKSLPRLSSIKFRRPLIRKSSGGTDLKKKMKRSRSIKLADRSSIVFASDADASVDYLEAKNCSDGRNVHFQAS PHLESTLISNNEDRKKSSNSKQNLASSGNNSMRVMTRTSTLRPVRIFTKVASFRTKRSQIPDSSIQKTTCSSAIKDSKFPNHLELQPGGSESEGNSIMKV CPYSYCSLHDHRHSDVPPLKRFVSMRRRLLKTQKSMKSESQSSRRAKHSGISKKGTQTSQSASCGDLAVLETAHDKMAVSSSIGRKAGQRAESKSAHGGD EKDYRDVISVTENQTLPEEADEGRIASLNLNVFKGDSQLNTAKENASTSVADERVNKPRSLSLNRFVESTEIDNKVSSVSIGKPSQEETASCEEKNQDAV QDYRFLGADSEHDYTVDTGHRNPWEKQKPMGLWNLIYQHMASGVAAEDGTRPHLNKEAKEEEEEENTLPGMSKSGSFQDFSSTDHSIGEEYHDERSQKIQ QYQCDAIKLVQEAFDRILSEIPDQPTDDLSVTSDTTSDKKIAENDHGEDRQLNISTSYDSCGDSMVQEPEETRLQADNAFQKEKAESSVESKSNQQTPKS WSNLRKILILKRFIKALEKVRNFSPQKPRNLNVEADPEAEKVHLRHQTMGERKNSEEWMLDHALQQVISTLAPAQKRKVALLVQAFEKVTLPTEVGTSPR SNIEASSQTTPVKTSTGASDCKGSREGKETIFGITLCKTSSLETSFKQNQDQASDFYKVDEHIQGSCSEVKETSLKNGCIHLASSPSSTKNTAAELKNEF VAFNLGNGETNSTVKDDEPDFVSHCLVEDTDSNLCDNPLPRSADVLRTSSEELVIYGETLQEDAKEASAVSASEVHDRNFGLNGQKSDINNKNNGTCDES DEPKSQTLKDYEGSIANTDVVSSSSVSVPLKESSEVAGEENKLLQGSTLLDDSEPGCTTDAAHEKQKHMKFWFLIYKHMVSGNATLLEGAENEEQGDGGN QLVEMNTLDNDDAGNQKIKLQQIETIRLVEEAIDQIPLPEFQEDSPDDQSVACDIIQDQDQEHTEKKAGEGEEPFISSSFEDTNESFEKSDSTKVEESTT LYQQEQQLNSDNISAQEKAKPIPPAGNKPKPAMQNWSNLKKVILLKRFVKALEKVKKFNPREPRFLPLDPASEAEKVHLRHQDTGDRKNADEWMLDYTLQ QVVAKLTPARKRKVSLLVEAFEAVTPIGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04020			calmodulin binding (.1)		Potri.006G043900 [exp]	0	1
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Potri.003G141000 [exp]	15.16	0.7706
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.018G094200 [exp]	42.70	0.7464	4CL1.4
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126201 [exp]	52.01	0.7435
AT3G14470			NB-ARC domain-containing disea...		Potri.003G055600 [exp]	61.70	0.7149
AT3G59430			unknown protein		Potri.007G128500 [exp]	70.56	0.6999
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G016733 [exp]	95.45	0.7055
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.002G200900 [exp]	149.88	0.6958
AT3G23160			Protein of unknown function (D...		Potri.010G074000 [exp]	175.53	0.6835
AT1G33250			Protein of unknown function (D...		Potri.011G147300 [exp]	178.54	0.6805
AT3G10160		ATDFC, FPGS2	folylpolyglutamate synthetase ...		Potri.016G041800 [exp]	215.49	0.6698

Compare expression of checked genes

Potri.006G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.