Plant FIBer expression Database

Potri.006G044500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57170 471 / 1e-158 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033869
[exp]
662 / 0 AT3G57170 464 / 4e-156 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
Lus10003248
[exp]
244 / 2e-75 AT3G57170 215 / 2e-66 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
Lus10003249
[exp]
103 / 8e-24 AT3G57170 53 / 2e-08 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
Lus10014756
[exp]
66 / 8e-11 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3)
Lus10035602
[exp]
48 / 3e-06 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05024 Gpi1 N-acetylglucosaminyl transferase component (Gpi1)
Representative CDS sequence
>Potri.006G044500.1 pacid=42768991 polypeptide=Potri.006G044500.1.p locus=Potri.006G044500 ID=Potri.006G044500.1.v4.1 annot-version=v4.1
ATGAGAACCAAGTTAAGAATTTGGTGGCCAAATCAACTAGCTTCATCTGAACCAGCAACACCTTTGAATAAGAATAATCTCTTGCTCGGTTGGTTTGCTT
CTTGTTCTTCTGTTTCTGTTGATGTTGTAGTGGCCTTTGCTTGCAACGAAGCTTCATTTTCTCACTCCAATTCTACGCTCCAGGAGATTCTCCGCGGCGT
AAATGGGAAAATGCCTGTGTTTTTACAGGAGAGAGCGGCCTTTTCACTTTTGGGTCAGTGTGTTTTGTATGGAAGAGGTAATGGGAAAATGTCGAGGGAT
GGAATGGAAGGTGGTGATTGGAGGAATTCATTTACTGATGGTTTTGATTCGGTGATGAATAGCCGGGATCTGTCCGATGGAAAGGATGGAGGGAGTAGTT
GTGGGTGCAATGAACTTGATGGGTCGCATGAACAATGCAGGAAAGAGTGTGTTGAAAACGGGCTTTGGATTCGGTTGGTGTATGATTCTTGTGAAGGATA
TGGTAAAGACGTTCACCGGGTTCCAAAACTGCATCACTTGCATTGGAATGGGCAGATAGTTTCTCATTGCAATGTTCACGTTGTCGTTTATGAAATTCCT
GTATATGGGGTGCACCATTTCTCACTGAATCTTTGGAAGTCTTCCAAGCCAGTGAAAGATCCTGTCAAGAAACCCAAGTGGGTTAATGAACTTGAGAAAA
ATCAGCCTCTATTGGACTTGGATACAGTCATTCTGGCTATCAACAGTGCTGCAGCTGCTAAATTAGCTCTTGAGACACGTGTAGGCTTTAAGAGATCTGT
TTCTGGGTTTTTCATCATCATCAGCAGGTCTATTGCTTTCATGTGGCAAGTATTGGCCATTTTTGTGGCAACAATTTCCACTCTATTCTACATTGTTCTC
CAGTTATTCCATAATTTTTCAAGTTTTGGATCAAAAACACGGATATACACTACATCAGCGAGGGTGTTCTGCACTACATGGACACAAATTCAAATCCGCT
GTTGTCAGATTTTGTACTGGCCCATCGTTCTTCAAGATAATGGCCTTAGGTCACAGTCATGCGTGGAATATAAGGAGAATGCTGTGTTACATAGGAATTC
TATGTGGTCAAGTTTAGCTGTTGATCTTCTTTTGGGAAATTTGATGGGCTTGGCACTCTTAATTCATGCTGAATCTGTTTGCCAATGGATTTTGACCTTT
GCCAATGTCATTACCAATGAGTTATTGCGCTCAGGTTCTGTGTGGTTGATGGGAGTGCCAGCAGGTTTCAAGTTGAATACAGAACTGGCAGGAGTTCTTG
GCATGATTTCTCTTAATGCAATACAAATTTGGTCCACCCTTTGGATCTTTATTGGTTTTCTCTTCATTTATTTCATCAAAGGACTTGCTCTACTGGGGAT
TCTTTTTGGGGCAACTATTCCTGCTGCTTTGATCATAGATATGGCTTCCATAGCAACATTGCATGTGTCAACTCTTCATTGGGCAATCTCACTTTTGTAT
TCCTGGCAAATTCAGGCTTTAGCAGCTCTCTGGCGTCTTTTCAGGGGTCGAAAGTGGAATCCTTTGCGTCAGAGATTAGATAGCTATGACTACACTGTGA
AGCAACATATTGTGGGTTCCCTTCTGTTCACTCCACTTCTCCTTCTGTTACCAACAACTTCTGTTTTCTACATGTTCTTCACCATTTTGAGCACAACCAT
TGCTCTTTCTTGTATATTGATTGAAGTCACAATATCCATGATTCATAGCACACCATATATTAAAATTTTCCTTTGGTTGATGAGACGGAGAAGATTTCCC
TCTGGGATTTGGTTTGAAATTGCATCTTGTCAGAATGATTCTCTGGAGTTTGCACGTCATGACAAAGTATGTTCTTCCTCCAAGAAGTCTTATCGAAACA
ACGACAGAGGCGAAAACAGACCCAGCATTATGGTCTCATTTCTCCACAGCAACTTTTTGAGTATAGGACAAGTAGTTTTGCCTCACTATAGGAAGGTTTT
CTCCGGAGTTTCTGATTTTGCCATTACATCAGCTCATGGAGCTCTTACTGGTAAAAGAACCGTATCTACTTTGGGGACTTGCCTGCCTTCAACAATGCCA
TGGTTGTCTATCCCGGCAAGAGAGTATTGGTGCTTCTGCCGCAATTCAGTTCTTGCATGCATGGAAGAACGTGATTGCAATGAATGTCAATGA
AA sequence
>Potri.006G044500.1 pacid=42768991 polypeptide=Potri.006G044500.1.p locus=Potri.006G044500 ID=Potri.006G044500.1.v4.1 annot-version=v4.1
MRTKLRIWWPNQLASSEPATPLNKNNLLLGWFASCSSVSVDVVVAFACNEASFSHSNSTLQEILRGVNGKMPVFLQERAAFSLLGQCVLYGRGNGKMSRD
GMEGGDWRNSFTDGFDSVMNSRDLSDGKDGGSSCGCNELDGSHEQCRKECVENGLWIRLVYDSCEGYGKDVHRVPKLHHLHWNGQIVSHCNVHVVVYEIP
VYGVHHFSLNLWKSSKPVKDPVKKPKWVNELEKNQPLLDLDTVILAINSAAAAKLALETRVGFKRSVSGFFIIISRSIAFMWQVLAIFVATISTLFYIVL
QLFHNFSSFGSKTRIYTTSARVFCTTWTQIQIRCCQILYWPIVLQDNGLRSQSCVEYKENAVLHRNSMWSSLAVDLLLGNLMGLALLIHAESVCQWILTF
ANVITNELLRSGSVWLMGVPAGFKLNTELAGVLGMISLNAIQIWSTLWIFIGFLFIYFIKGLALLGILFGATIPAALIIDMASIATLHVSTLHWAISLLY
SWQIQALAALWRLFRGRKWNPLRQRLDSYDYTVKQHIVGSLLFTPLLLLLPTTSVFYMFFTILSTTIALSCILIEVTISMIHSTPYIKIFLWLMRRRRFP
SGIWFEIASCQNDSLEFARHDKVCSSSKKSYRNNDRGENRPSIMVSFLHSNFLSIGQVVLPHYRKVFSGVSDFAITSAHGALTGKRTVSTLGTCLPSTMP
WLSIPAREYWCFCRNSVLACMEERDCNECQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57170 N-acetylglucosaminyl transfera... Potri.006G044500
[exp]
0 1
AT4G14750 IQD19 IQ-domain 19 (.1) Potri.008G156700
[exp]
1.41 0.7998
AT4G24040 TREHALASE1, ATT... trehalase 1 (.1) Potri.006G068300
[exp]
3.31 0.7319
AT1G04360 RING/U-box superfamily protein... Potri.008G165900
[exp]
5.09 0.7911
AT1G64640 AtENODL8 early nodulin-like protein 8 (... Potri.001G085100
[exp]
5.47 0.7753
AT2G47270 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA... Potri.002G193300
[exp]
7.74 0.7408
AT3G12600 ATNUDT16 nudix hydrolase homolog 16 (.1... Potri.016G036700
[exp]
10.19 0.7366
AT2G12646 PLATZ transcription factor fam... Potri.018G116000
[exp]
10.58 0.7264
AT4G30410 sequence-specific DNA binding ... Potri.018G099100
[exp]
12.32 0.7584
Potri.019G089200
[exp]
13.22 0.7033
AT5G16170 Core-2/I-branching beta-1,6-N-... Potri.004G097700
[exp]
13.49 0.7300

Potri.006G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.