Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04010 114 / 7e-30 F-box family protein (.1) AT5G03920 49 / 5e-07 unknown protein AT4G24210 40 / 0.0003 SLY1 SLEEPY1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G076800 [exp] 199 / 7e-63 AT5G04010 122 / 9e-33 F-box family protein (.1) Potri.004G077301 [exp] 115 / 2e-31 AT5G04010 54 / 9e-09 F-box family protein (.1) Potri.017G092800 [exp] 44 / 4e-05 AT5G39250 334 / 7e-117 F-box family protein (.1) Potri.014G022100 [exp] 44 / 4e-05 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.004G119500 [exp] 43 / 0.0001 AT5G39250 347 / 8e-122 F-box family protein (.1) Potri.002G122300 [exp] 42 / 0.0001 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031031 [exp] 167 / 1e-50 AT5G04010 106 / 4e-27 F-box family protein (.1) Lus10042637 [exp] 40 / 0.001 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1) Lus10035421 [exp] 0 / 1 AT5G04010 58 / 1e-09 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G044801.1 pacid=42770144 polypeptide=Potri.006G044801.1.p locus=Potri.006G044801 ID=Potri.006G044801.1.v4.1 annot-version=v4.1 ATGCAACGCCAAAAGAGATTACAAGTCCAAGCTATGTCAATTAGATCTCCCAAATCTTCATCGCCGCCACCGTGGGGGGTTCTTGTTCTTCTTGCTCACC ATCTTGACCCTAAATCTTTAGGGGTGGCTTCATGTGTGTCCAAGTCATGGTACTTGTCCATGGCGTCTGACCATATTTGGCAACCTTTGTGTATGAGTCA TTACCCTTCTCTTTCTAACCTTAAGATTACACATCCTTCTGTCTCTTACCACCGTTTGTATGCCATGGCATACGTTGCTGCCAAACGCAGGGTGAGAGGT CCCTCCGTGCCTCAATTTTCCGTGGACAGTCTCATCTTTGATATCCATATTCTGGGCACCAAGGACAATCATCCTATCGTCAAAATAGCAAAGCCTGGTA ATGAATTTTGTTTTGATCATAATGGGGTGTTTAGATTTGATTTTGGAGTGAATAATTATGAGTGCTTGACGTCGTCAATGAATGAGATGCTAGAGGATGT AAAAATCACATGGAATGTGGTGTTGAAAGATTGGAGTGCGGTTTTTACCATGATGGATTATGAAGGGAAAGTGAGATATTCTCCTGGGTCTGAAGGTTGG TTTTCGCAGGAGTTACCACCACCACGGTGTTGCTCTAGTGATTCCACAAGTGGGATCGTGGCAGATTTGAAGTTGGTATTCTATCGTAGGAAAGATGGTG GTGACAAAGTTAGGGTTGACAAGGTAAGTGTGGGAATATTGAATGTTGTTAATTGGAGGTACGTGATTGTTGAGGATGGTATCAGGTACTTGCAACATTT CCTTTTTCCATCTTGA
AA sequence Show only first row Show all	>Potri.006G044801.1 pacid=42770144 polypeptide=Potri.006G044801.1.p locus=Potri.006G044801 ID=Potri.006G044801.1.v4.1 annot-version=v4.1 MQRQKRLQVQAMSIRSPKSSSPPPWGVLVLLAHHLDPKSLGVASCVSKSWYLSMASDHIWQPLCMSHYPSLSNLKITHPSVSYHRLYAMAYVAAKRRVRG PSVPQFSVDSLIFDIHILGTKDNHPIVKIAKPGNEFCFDHNGVFRFDFGVNNYECLTSSMNEMLEDVKITWNVVLKDWSAVFTMMDYEGKVRYSPGSEGW FSQELPPPRCCSSDSTSGIVADLKLVFYRRKDGGDKVRVDKVSVGILNVVNWRYVIVEDGIRYLQHFLFPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04010			F-box family protein (.1)		Potri.006G044801 [exp]	0	1
AT3G18360			VQ motif-containing protein (....		Potri.015G046600 [exp]	1.73	0.9836
AT3G29000			Calcium-binding EF-hand family...		Potri.008G087900 [exp]	2.00	0.9782
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.001G102300 [exp]	4.47	0.9727
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	6.48	0.9647	WRKY40.2
					Potri.010G078950 [exp]	7.48	0.9539
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088358 [exp]	9.00	0.9508
AT5G49620	MYB	ATMYB78	myb domain protein 78 (.1.2)		Potri.002G191800 [exp]	10.39	0.9425
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G047000 [exp]	10.90	0.9568	ERF7
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Potri.011G083900 [exp]	11.95	0.9412
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046900 [exp]	12.96	0.9409	ERF11,Pt-EREBP1.3

Compare expression of checked genes

Potri.006G044801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.