Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57190 425 / 1e-147 PrfB3 peptide chain release factor 3, peptide chain release factor, putative (.1) AT5G36170 238 / 7e-74 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT1G56350 118 / 4e-29 Peptide chain release factor 2 (.1) AT3G62910 76 / 1e-14 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT2G47020 69 / 1e-12 Peptide chain release factor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075800 [exp] 254 / 4e-80 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.013G009200 [exp] 113 / 4e-27 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.014G133400 [exp] 71 / 5e-13 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.014G114000 [exp] 69 / 1e-12 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036446 [exp] 248 / 1e-77 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 241 / 4e-76 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10010922 [exp] 126 / 1e-31 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10031411 [exp] 124 / 5e-31 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10005944 [exp] 73 / 8e-14 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 69 / 2e-12 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10038039 [exp] 67 / 9e-12 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10009980 [exp] 67 / 9e-12 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [poplar] [flax] RF PF00472 [poplar] [flax] RF-1 RF-1 domain CL0337 [poplar] [flax] PF03462 [poplar] [flax] PCRF PCRF domain
Representative CDS sequence Show only first row Show all	>Potri.006G045200.1 pacid=42770013 polypeptide=Potri.006G045200.1.p locus=Potri.006G045200 ID=Potri.006G045200.1.v4.1 annot-version=v4.1 ATGGCAGCAGAACCTGTATTTGTAAGTGGAGCTACTGCTATTCCCTCAAAGTTTCAGTCTTTTACAAGAAACATCAATGACAAGTCACAAGCCAAGCTTC TTTTATACTCGAGAGTCAGAGCTTCACAAAAACATTCCATGGATGACAAAAACAATGTCTACAAACAACTGGGTTTGTTTTCTTTGAAAAAGAATATTGA AGATACGGTTCTCCGTGCTGAGATGTTAGCACCAACAGCACTGGAACATGAGGAAGCAAGACGAATCAAGCAGGAAGAAATGATACATGAGTGCAACTTA TGGGAAGACCCTGCTAAATCCAATGAAATCCTCATCAAATTGGCTGGTAGTGCCAAAGCAATTGATGCTCTCAAAGACTTGAAATACAAGGCTGAAGAGG CAAAGCTGATCTCGCAGTTGGTGGAGATGGAAGCTATCAATTACCAGCTTTTTAAGCAGGCTTATACTGCATCTTTAGATGTGAGGAAGCTCTTAGATCA GTATGAGATGTCACGGCTCCTCAAGGGACCATATGACAAGCAGGGAGCTTGTGTAGTTATTAGAGCTGGATCTAAAGGACTTAACCATGAGATATGGAAA GAAGAACTTCTGAATATGTATGTCAAATGGGCTGAAAAGCTAGGTTATAAAGGCAGGCTGGTTGAGAAGCATACTTCCATGCATGGAGGTATCGAGTCAG CGACTATTGAATTCGAATTTGAGTGTGCTTATGGTTATCTTTCCGGGGAGAGAGGCATTCACCATAAGATAAATTCTCAAAATGGATCTGTTCACCATGA GGTTACCACAGCATGTGTAGACGTTGTACCTCTATTTCTTGGAACAGGTTTTGACTTTCAAATAGATGATGAGGAATTGATTGTCTCGTGTTCTCCCTCA TTGCTAAGAGACAGGAAGAGCCGAACTGAACTGACAGTTTGCCTGCAGCATATTCCTACTGGCATAAGTGTTCAGTCTTCAGGTGAGAGGAGCCATTTTG CAAATAAGGTGAAGGCTCACAACAGATTGAAAGCCAAGCTTCTTGTGATTGCAGAGGAGCAAAAGGTCTGCGATGTGAGTAGCATCAGGAGAGCTGACAT TGTGGATGAGTGGCAAAAAGAGACCAGGAGGTATGTGTCTCAACCGTACAAGCTAGTACAAGATGTAAGAACGGGCATTGAACTGCCTGACCTAAACTCT ATTTTGGATGGAAATATCAATACTCTTATCGGAGCCCATATTAATATTAGACATACAGAATAA
AA sequence Show only first row Show all	>Potri.006G045200.1 pacid=42770013 polypeptide=Potri.006G045200.1.p locus=Potri.006G045200 ID=Potri.006G045200.1.v4.1 annot-version=v4.1 MAAEPVFVSGATAIPSKFQSFTRNINDKSQAKLLLYSRVRASQKHSMDDKNNVYKQLGLFSLKKNIEDTVLRAEMLAPTALEHEEARRIKQEEMIHECNL WEDPAKSNEILIKLAGSAKAIDALKDLKYKAEEAKLISQLVEMEAINYQLFKQAYTASLDVRKLLDQYEMSRLLKGPYDKQGACVVIRAGSKGLNHEIWK EELLNMYVKWAEKLGYKGRLVEKHTSMHGGIESATIEFEFECAYGYLSGERGIHHKINSQNGSVHHEVTTACVDVVPLFLGTGFDFQIDDEELIVSCSPS LLRDRKSRTELTVCLQHIPTGISVQSSGERSHFANKVKAHNRLKAKLLVIAEEQKVCDVSSIRRADIVDEWQKETRRYVSQPYKLVQDVRTGIELPDLNS ILDGNINTLIGAHINIRHTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57190		PrfB3	peptide chain release factor 3...		Potri.006G045200 [exp]	0	1
AT2G26500			cytochrome b6f complex subunit...		Potri.014G037000 [exp]	2.44	0.9368
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.010G046300 [exp]	5.09	0.9368
AT1G16080			unknown protein		Potri.003G185901 [exp]	6.00	0.9166
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.001G340800 [exp]	7.74	0.9095
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Potri.006G228000 [exp]	15.68	0.9313
AT2G33855			unknown protein		Potri.004G048400 [exp]	16.12	0.9195
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.011G106100 [exp]	16.97	0.9300
AT3G47490			HNH endonuclease (.1.2.3)		Potri.009G004200 [exp]	21.02	0.8428
AT1G73470			unknown protein		Potri.015G033200 [exp]	21.63	0.8880
AT1G53520			Chalcone-flavanone isomerase f...		Potri.011G101800 [exp]	25.69	0.8990

Compare expression of checked genes

Potri.006G045200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.