Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10160 706 / 0 ATDFC, FPGS2 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) AT5G05980 530 / 0 ATDFB, FPGS1 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) AT3G55630 493 / 9e-169 ATDFD, FPGS3 folylpolyglutamate synthetase 3, DHFS-FPGS homolog D (.1.2.3) AT5G41480 130 / 1e-31 EMB9, ATDFA, GLA1 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041800 [exp] 1094 / 0 AT3G10160 708 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.010G197800 [exp] 570 / 0 AT5G05980 686 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.008G060600 [exp] 566 / 0 AT5G05980 724 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.015G022400 [exp] 119 / 4e-28 AT5G41480 570 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040261 [exp] 566 / 0 AT5G05980 723 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10030161 [exp] 541 / 0 AT5G05980 696 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10004694 [exp] 529 / 0 AT5G05980 694 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10001023 [exp] 466 / 2e-158 AT5G05980 599 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10014939 [exp] 130 / 1e-31 AT5G41480 558 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10038824 [exp] 126 / 3e-30 AT5G41480 553 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08245 [poplar] [flax] Mur_ligase_M Mur ligase middle domain
Representative CDS sequence Show only first row Show all	>Potri.006G045400.1 pacid=42770406 polypeptide=Potri.006G045400.1.p locus=Potri.006G045400 ID=Potri.006G045400.1.v4.1 annot-version=v4.1 ATGAAATCTTCGGCCACCGGCACGAACCGCAGATACTGGTCTGAGAGGCAAGTGCTGCCAGCCCAACTCCCAAAAAATGGTTCCCTCTCTCATTACTTCC TTGGGTTGATGTTTCCAGCACTAATTCATACAAGTACTCATCTGAAAGGTGGGATATTTGGAGTTCCACGCTTCCATAAAAGAGAAAGTCAATTCTCCAT CAGAACACCATGTAAATTTTCCTTCCAACCAGCTTATGTAGACATGTATAGTCTGAGCAGACGTAGGAAAATCCTTTCCCAGGAAAAAGGTTTTAGGTAT CGAAACATGGCATCTCAAAACATGGAAAAACTGGAAAGTAATGTGGCTATCATCGATTACGTGCAAGATGTGCCTCTTTCAACTTCATATGAAGTAGCCA TGGAAGCTCTTTCTTCCCTTATTAGACAGAAAAAACGCGGAGATCGAAAGGGGATTGGTGGTAAATATGGAAAATTGGACAGAATGCGGATATATCTTAA GATACTAGACTTGGAAGAGCATATGGCCGGGCTCAAAATTATCCATGTTGCTGGAACTAAAGGGAAGGGTTCAACATGCACATTCTGTGAGGCTATGTTA AGGGAATCTGGTTTTCGAACAGGGCTGTTTACTTCTCCTCACCTAATTGATGTTAGAGAAAGATTCAGGATAAATGGAGTGGACATATCTGAAGATAAAT TTCTATCGTATTTTTGGAATTGCTGGAATCGGTTGAAGGAACATGAAACTGAGGACCTGCCAATGCCCCCGCTATTTCAGTTCCTAACTGTGTTGGCATT CAAAATATTTGTCTGCGAACAGGTAGATGTTTCTATCATTGAAGTTGGTCTTGGCGGAAGAAATGATTCAACAAATGTGATTGAAGAGCCCGTTGTCTGT GGCATTACTTCTCTGGGAATGGATCACACAGAAGCATTGGGCAATACCATTGGACAGATTGCTTCACACAAGGCTGGAATTTTCAAGCATCAAATTCCTG CCTTTACTGTGCCACAAGTCTCTGAAGCAATGGATGTTCTTCAGGAGAATGCCCAAGAACTGACGGTCCCCCTGAAAGTAGTGGAACCTCTTGATTCAAA TGAGTTGAATGGACTGAAGCTTAGTTTGTCTGGCAATCATCAGTTGTCTAATGCTGGTCTTGCTGTTTCCCTTTGCAAATGTTGGCTTCAAAGAACAGGA AATTGGGAGAAGCTATTCCAAATTGATAACAAGGAAGCTAATTTACCAGAGGCATTTCTTAGAGGTCTTTCTAAAGCACATATTGCTGGGAGGGCTCAAA TAGTTCCTGATCTTTCTTCAACTTCAAGCTCCTGTATTTCATCAGAAGTAGCTGAAGCTTCGGGCGATCTCATTTTCTACTTGGATGGAGCTCACAGTCC AGAGAGCATGGAGGTTTGCGCCGAATGGTTTTCTAGTGCTGTTAAAGAAAACAACCTATCATCATCACTGGTTTCATTTTCTTCACATGACATTGAAAGT ATAAACAAAGTGCCGGGAAATGGTTACATGCAGCACGAGAAATTCAACATTCAAGAAATCAATAAAATATCGAAGAAGATTCTTTTATTTAATTGCATGG ATGTTAGAGATCCTCAGATCTTGCTTCCACGGCTTGTGAGTACATGTGCTTCCTCAGGTACTTTCTTCTCAAAGGCCATTTTTGTCCCAAGTATCTCAAC ATATAACAAGGTTACTTCTGGTACCTCAGTTGTCCCTTCAGATATCTCTAGCAAGGACTTGTCATGGCAATTCAGCCTGCAGAGACTCTGGGAGAAGATT GTCCACGGGATAGATACAGATTCTTTACTTGAAAAGAGTACGAAGATGGATGGTGCAGAGACCTTACCACGTCGTCAATTCCTTTATGAAGATGCTTCTA ATTGCAGTCCTACAGATGGATATTTGGCTTGCAGTGCTGTAATTCCTTCATTGCCATTGACGATAAAATGGTTGAGGCATTGTGTTAGAGAAAACCCTTC CCTAAGACTTCAGGTTCTTGTCACTGGATCATTGCATCTAGTTGGAGATGTACTCAAGCTAATAAGGAGATGA
AA sequence Show only first row Show all	>Potri.006G045400.1 pacid=42770406 polypeptide=Potri.006G045400.1.p locus=Potri.006G045400 ID=Potri.006G045400.1.v4.1 annot-version=v4.1 MKSSATGTNRRYWSERQVLPAQLPKNGSLSHYFLGLMFPALIHTSTHLKGGIFGVPRFHKRESQFSIRTPCKFSFQPAYVDMYSLSRRRKILSQEKGFRY RNMASQNMEKLESNVAIIDYVQDVPLSTSYEVAMEALSSLIRQKKRGDRKGIGGKYGKLDRMRIYLKILDLEEHMAGLKIIHVAGTKGKGSTCTFCEAML RESGFRTGLFTSPHLIDVRERFRINGVDISEDKFLSYFWNCWNRLKEHETEDLPMPPLFQFLTVLAFKIFVCEQVDVSIIEVGLGGRNDSTNVIEEPVVC GITSLGMDHTEALGNTIGQIASHKAGIFKHQIPAFTVPQVSEAMDVLQENAQELTVPLKVVEPLDSNELNGLKLSLSGNHQLSNAGLAVSLCKCWLQRTG NWEKLFQIDNKEANLPEAFLRGLSKAHIAGRAQIVPDLSSTSSSCISSEVAEASGDLIFYLDGAHSPESMEVCAEWFSSAVKENNLSSSLVSFSSHDIES INKVPGNGYMQHEKFNIQEINKISKKILLFNCMDVRDPQILLPRLVSTCASSGTFFSKAIFVPSISTYNKVTSGTSVVPSDISSKDLSWQFSLQRLWEKI VHGIDTDSLLEKSTKMDGAETLPRRQFLYEDASNCSPTDGYLACSAVIPSLPLTIKWLRHCVRENPSLRLQVLVTGSLHLVGDVLKLIRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10160		ATDFC, FPGS2	folylpolyglutamate synthetase ...		Potri.006G045400 [exp]	0	1
AT2G20830			transferases;folic acid bindin...		Potri.013G145700 [exp]	3.74	0.7526
AT1G78910			Pseudouridine synthase family ...		Potri.004G228200 [exp]	4.58	0.7161
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Potri.004G163700 [exp]	12.64	0.6396
AT5G20220			zinc knuckle (CCHC-type) famil...		Potri.010G092600 [exp]	15.74	0.7074
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Potri.008G152800 [exp]	16.91	0.7188
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Potri.001G006400 [exp]	19.74	0.6303	Pt-SCL33.2
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Potri.016G095900 [exp]	24.12	0.6785
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Potri.019G071700 [exp]	31.46	0.6235	Pt-HSDH.1
AT1G43245			SET domain-containing protein ...		Potri.005G193701 [exp]	52.99	0.6423
AT1G18490			Protein of unknown function (D...		Potri.012G057400 [exp]	54.24	0.5805

Compare expression of checked genes

Potri.006G045400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.