Plant FIBer expression Database

Potri.006G045700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57220 567 / 0 Glycosyl transferase family 4 protein (.1)
AT2G41490 566 / 0 GPT UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G042100
[exp]
686 / 0 AT2G41490 562 / 0.0 UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016077
[exp]
550 / 0 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1)
Lus10012300
[exp]
483 / 3e-170 AT2G41490 542 / 0.0 UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00953 Glycos_transf_4 Glycosyl transferase family 4
Representative CDS sequence
>Potri.006G045700.1 pacid=42768252 polypeptide=Potri.006G045700.1.p locus=Potri.006G045700 ID=Potri.006G045700.1.v4.1 annot-version=v4.1
ATGGCAAGAAAGAGAGCTTCGGAACCAACAACAATAAAAACAACAAAAGAAGCAATTGTTACAAGCGACAAAGAAACCAAACCTCCTCCTCCTCCTCCTC
GAGAAACAAGCAATGACCAACCAATTGCACCACCAAAAAAAGGATTCATTTTTAAGCTCTCTCTTTTACTTATAGCCCCATACTTTTACTTGCTCTTATT
TCACTACCAGATCCAACATGACCTCATCAAACCTATTCTTATCAATGCTGGTCTTAGTCTTGCTGGGTTTTTTCTCACCGTTAAGTTGATTCCTGTGGCT
TCTAAATATGTTTTGAAAAGGAACTTGTTTGGCTATGATATTAACAAGAAGGGTACTCCTCAAGGGACTGTTAAAGTGCCTGAATCATTGGGTATTGTTG
TCGCTGTAGTCTTCATGGTTTTGACTATAGTATTTCAGTTTTTAAACTTCGCGCCAGATTCCAATTGGCTTGTTGAGTACAATGCAGCACTAGCATCAAT
TTGCTTCATGACTCTACTCGGATTCATAGATGATGTCCTTGATGTTCCATGGAGAGTCAAATTATTGCTTCCGTCAATTGCTGCCCTTCCATTGCTGATG
GCATACGCTGGACATACAACTATCATTATACCAAAGCCTCTTGTTCCATATATTGGGCTCAAGGTTTTGGACCTGGGATTTATATATAAGATTTACATGT
GGTTTTTGGCAATTTTCTGCACAAATTGCATTAACATTCATGCTGGTATAAATGGCCTTGAAGCTGGTCAAACAGTTGTGATCGCATCTGCGATTTTGAT
ACATAACGTCATGCAAATTGGAGCATCTGCAGATCCTGAGTATCAACAGGCTCATGCATTCTCTGTGTATCTTGTCCAACCCTTACTGGCAACCTCTTTG
GCTTTGCTTTCTTACAATTGGTATCCTTCTTCAGTCTTTGTTGGAGATACTTATACATACTTTGCAGGGATGACGATGGCTGTTGTTGGGATTTTAGGCC
ATTTTAGTGAAACGCTCCTGATTTTCTTTTTAGCACAAGTATTAAACTTCCTCCTGTCAGTTCCTCAGCTTTTTGGCTTCAGGCATTGTCCAAGACATCG
TCTACCTAGGTTCGATCCTCAAACAGGACTTCTTACAGGAACAAACGATGGGACACTTGTTAATTTTTACTTGAGAATGTTCGGCAGGAAGACAGAAAAT
TCACTTTGCGTGCATCTTCTTCTTGTTCAGGCACTCGGATGCTGCATATGTTTTGGGCTGAGGTATTTACTCACCGGTTGGTATAAATGA
AA sequence
>Potri.006G045700.1 pacid=42768252 polypeptide=Potri.006G045700.1.p locus=Potri.006G045700 ID=Potri.006G045700.1.v4.1 annot-version=v4.1
MARKRASEPTTIKTTKEAIVTSDKETKPPPPPPRETSNDQPIAPPKKGFIFKLSLLLIAPYFYLLLFHYQIQHDLIKPILINAGLSLAGFFLTVKLIPVA
SKYVLKRNLFGYDINKKGTPQGTVKVPESLGIVVAVVFMVLTIVFQFLNFAPDSNWLVEYNAALASICFMTLLGFIDDVLDVPWRVKLLLPSIAALPLLM
AYAGHTTIIIPKPLVPYIGLKVLDLGFIYKIYMWFLAIFCTNCINIHAGINGLEAGQTVVIASAILIHNVMQIGASADPEYQQAHAFSVYLVQPLLATSL
ALLSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLAQVLNFLLSVPQLFGFRHCPRHRLPRFDPQTGLLTGTNDGTLVNFYLRMFGRKTEN
SLCVHLLLVQALGCCICFGLRYLLTGWYK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57220 Glycosyl transferase family 4 ... Potri.006G045700
[exp]
0 1
AT1G73965 CLE13 CLAVATA3/ESR-RELATED 13 (.1) Potri.008G115600
[exp]
2.82 0.9225 CLE12.2
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.018G119500
[exp]
3.46 0.9470
AT2G01275 RING/FYVE/PHD zinc finger supe... Potri.004G093500
[exp]
3.46 0.9475
AT5G13500 unknown protein Potri.003G195600
[exp]
5.47 0.9169
AT1G28240 Protein of unknown function (D... Potri.004G044100
[exp]
5.65 0.9468
AT1G67730 ATKCR1, YBR159,... beta-ketoacyl reductase 1 (.1) Potri.008G181700
[exp]
6.00 0.9123
AT1G19600 pfkB-like carbohydrate kinase ... Potri.002G034000
[exp]
7.07 0.9343
Potri.008G115533
[exp]
7.34 0.9264
AT2G35880 TPX2 (targeting protein for Xk... Potri.016G066600
[exp]
9.16 0.9257
AT3G15620 UVR3 UV REPAIR DEFECTIVE 3, DNA pho... Potri.003G060000
[exp]
10.00 0.9048

Potri.006G045700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.