Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41500 614 / 0 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT2G05720 249 / 1e-78 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 148 / 4e-40 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 129 / 8e-32 MAC3B MOS4-associated complex 3B (.1.2.3) AT4G02730 120 / 5e-30 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 121 / 3e-29 PRL1 pleiotropic regulatory locus 1 (.1) AT5G25150 120 / 2e-28 TAF5 TBP-associated factor 5 (.1) AT4G32551 115 / 8e-27 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT1G61210 114 / 3e-26 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G04510 111 / 7e-26 MAC3A MOS4-associated complex 3A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G042250 [exp] 493 / 1e-169 AT2G41500 327 / 8e-105 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G148500 [exp] 147 / 2e-39 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 137 / 5e-36 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G171600 [exp] 122 / 2e-29 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.018G020200 [exp] 121 / 8e-29 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.010G066000 [exp] 119 / 2e-28 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.006G263400 [exp] 119 / 5e-28 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G012800 [exp] 115 / 3e-27 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.007G050100 [exp] 113 / 2e-26 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021059 [exp] 700 / 0 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 699 / 0 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003487 [exp] 150 / 1e-40 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 139 / 1e-36 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 138 / 3e-36 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023728 [exp] 122 / 5e-29 AT2G33340 786 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10024447 [exp] 119 / 5e-28 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10014477 [exp] 118 / 5e-28 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10017754 [exp] 114 / 3e-26 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10037500 [exp] 112 / 5e-26 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF08799 [poplar] [flax] PRP4 pre-mRNA processing factor 4 (PRP4) like
Representative CDS sequence Show only first row Show all	>Potri.006G045800.1 pacid=42767342 polypeptide=Potri.006G045800.1.p locus=Potri.006G045800 ID=Potri.006G045800.1.v4.1 annot-version=v4.1 ATGGCAGCTGAAGAGGAAAATCCCGCTTTGTCAAATTTACCAGAAGAATCTTCTGCTGTAGTCCCTGATGATGAACTGATGATTGATAACTCTAGTCCTA TTCAACCAACTCCACCAATCATTCCGCCGGTAATCCCATCTTCAATACCAGTTTTGCCTTCTATCGCTCCAATACCTATAGTTCCTCCCCGCCCATTAGC ACCGCTCCCCATCCGACCGCCTGCAACTAGGCCACCTGGGGTGCAAAATGGTGAGATGAGAACTAGTGACTCAGATTCTGACCAAGAGGAATTAAGTCCC ACTGGGACTACCCCGGGGTCAACTGGGGGTTATGAAATTTCGGAAGCCAGCAGACTAGTAAGAGAACGGCAGCAAAAGGCAATGCAGGAGTTTATGATGA AGAAGCGTGCTGCTGCTTTGGCAGTGCCTACTAATGATATGGCAGTTAGGACTCGTCTTCGCCGGCTTGGTGAGCCTATAACTCTTTTCGGAGAACGAGA GATGGAGAGACGGGACAGGTTGAGGATGCTTATGGCTAAGTTGGATTCTGAAGGACAATTGGAGAAGTTGATGAAAGTTCATGAGGAAGAGGAGGCTGCA TCTACTGCGGCAGCAGAAGATGCCGAGGAAGAATTTGTTCAGTATCCATTCTACACTGAAGGGTCGAAAGAGCTCTTGGATGCTAGAATTGATATTGCTA AATACTCCATTTCGAAGGCAGCTTTGCGTCTTCAACGTGCAAGGAGAAAAAGAGATGACCCAGATGAAGATGAAGATGCAGAGATTGATTGGAGTCTGAA TCAGGCGGAGAGTTTGAGTCTTAATTGCAGCGAGCTTGGAGATGACCGGCCACTCTCTGGCTGTTCCTTCTCTTGTGACGGAGAAATGCTCGCTACCTGT TCCTTAAGTGGAGTTGCTAAAATATGGAGTGTGCCTCAAGTTACAAAGGTTTCTAACTTAAAGGGACACATGGAACGTGCAACTGATGTTGCCTTCTCTC CTGTGCACAATCATTTGGCAACTGCCTCCGCTGATCGAACTGCAAGGTTGTGGAACACTGATGGTTCTCTCCTGATGAAGTTTGAAGGTCATCTAGACCG TCTTGCTCGTGTTGCTTTCCATCCATCAGGGAAGTACTTGGGCACCACGAGCTTTGATAAGACATGGAGACTGTGGGATATAGATTCTGGTGTGGAGCTG CTCCTTCAAGAAGGTCACAGTCGGAGCATTTATGGAATAGCTTTCCATCATGATGGATCATTAGCAGCATCCTGTGGATTGGATGCACTAGCACGTGTTT GGGACCTACGTACTGGGAGAAGTATAATGGCATTCGAAGGCCATGTCAAGCCGCTTCTTGGGATCAGCTTTTCACCCAATGGCTATCATTTAGCGACTGG CGGAGAGGATAATACTTGCCGGATATGGGATTTAAGGAAGAAAAAATCATTGTATGTCATACCAGCACACTCAAATCTCGTATCACAAGTAAAGTTTGAG CCCCAAGAAGGATACTATCTGGTTACATCATCATATGACATGACTGCTAAGGTTTGGTCTGGCCGAGATTTTAAGCATGTCAAGACATTATCAGCTCACG AAGCCAAAGTTACATCTCTGGATATTAGTGCAGATGGACGTCTAATTGCGACTGTCTCACATGACCGAACCATCAAGCTGTGGTCCAGCAGAAGCAATGA AAAGGATGCTATGGAGGTTGAATGA
AA sequence Show only first row Show all	>Potri.006G045800.1 pacid=42767342 polypeptide=Potri.006G045800.1.p locus=Potri.006G045800 ID=Potri.006G045800.1.v4.1 annot-version=v4.1 MAAEEENPALSNLPEESSAVVPDDELMIDNSSPIQPTPPIIPPVIPSSIPVLPSIAPIPIVPPRPLAPLPIRPPATRPPGVQNGEMRTSDSDSDQEELSP TGTTPGSTGGYEISEASRLVRERQQKAMQEFMMKKRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMLMAKLDSEGQLEKLMKVHEEEEAA STAAAEDAEEEFVQYPFYTEGSKELLDARIDIAKYSISKAALRLQRARRKRDDPDEDEDAEIDWSLNQAESLSLNCSELGDDRPLSGCSFSCDGEMLATC SLSGVAKIWSVPQVTKVSNLKGHMERATDVAFSPVHNHLATASADRTARLWNTDGSLLMKFEGHLDRLARVAFHPSGKYLGTTSFDKTWRLWDIDSGVEL LLQEGHSRSIYGIAFHHDGSLAASCGLDALARVWDLRTGRSIMAFEGHVKPLLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYVIPAHSNLVSQVKFE PQEGYYLVTSSYDMTAKVWSGRDFKHVKTLSAHEAKVTSLDISADGRLIATVSHDRTIKLWSSRSNEKDAMEVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	0	1
AT3G42170			BED zinc finger ;hAT family di...		Potri.003G031700 [exp]	1.41	0.9044
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.006G032500 [exp]	3.16	0.8913
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.004G204300 [exp]	3.74	0.9040	IDH1.1
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.012G083800 [exp]	5.29	0.8694	Pt-HDA6.2,HDA909
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.002G044000 [exp]	5.29	0.8830
AT2G46200			unknown protein		Potri.014G091400 [exp]	5.65	0.8677
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Potri.018G015300 [exp]	6.00	0.8714
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.006G275300 [exp]	6.08	0.8456	FZF.2
AT5G22100			RNA cyclase family protein (.1...		Potri.001G216400 [exp]	6.63	0.8398
AT4G30840			Transducin/WD40 repeat-like su...		Potri.006G180300 [exp]	7.07	0.8568

Compare expression of checked genes

Potri.006G045800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.