Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03960 197 / 1e-58 IQD12 IQ-domain 12 (.1) AT5G13460 112 / 3e-27 IQD11 IQ-domain 11 (.1) AT1G76705 58 / 5e-10 calmodulin binding (.1) AT3G59690 60 / 2e-09 IQD13 IQ-domain 13 (.1) AT2G43680 59 / 4e-09 IQD14 IQ-domain 14 (.1.2.3) AT3G52290 55 / 5e-08 IQD3 IQ-domain 3 (.1) AT3G09710 51 / 1e-06 IQD1 IQ-domain 1 (.1.2) AT4G14750 50 / 2e-06 IQD19 IQ-domain 19 (.1) AT5G03040 43 / 0.0004 IQD2 IQ-domain 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G042700 [exp] 508 / 5e-180 AT5G03960 180 / 2e-52 IQ-domain 12 (.1) Potri.001G021000 [exp] 195 / 3e-57 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.010G218100 [exp] 58 / 7e-09 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.019G095700 [exp] 54 / 1e-07 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.013G127200 [exp] 53 / 2e-07 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.001G448100 [exp] 53 / 3e-07 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.006G131100 [exp] 51 / 1e-06 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 43 / 0.0003 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042027 [exp] 126 / 7e-32 AT5G03960 169 / 5e-48 IQ-domain 12 (.1) Lus10018031 [exp] 106 / 2e-25 AT5G03960 119 / 3e-30 IQ-domain 12 (.1) Lus10039573 [exp] 97 / 2e-21 AT5G13460 243 / 9e-76 IQ-domain 11 (.1) Lus10005315 [exp] 95 / 5e-21 AT5G13460 235 / 7e-73 IQ-domain 11 (.1) Lus10018029 [exp] 76 / 8e-15 AT5G03960 114 / 2e-28 IQ-domain 12 (.1) Lus10025593 [exp] 61 / 1e-09 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10036508 [exp] 59 / 3e-09 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 58 / 7e-09 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10027059 [exp] 56 / 3e-08 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10042025 [exp] 52 / 5e-07 AT5G03960 80 / 2e-16 IQ-domain 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.006G046000.1 pacid=42769918 polypeptide=Potri.006G046000.1.p locus=Potri.006G046000 ID=Potri.006G046000.1.v4.1 annot-version=v4.1 ATGGCAAAGAAGAGGTGCTGGTTTGGTTGGGTGAGGAGGCTATTTGTCTCTGAGCAAAAAACAAAAGCAGAAAAGAAGTCAAAGAGGTGGAAATGGGTTC TTGGAGGGCTTAAGGTTAAACAATGCCCTGCACTTCCAGCACCAGAGAGATCAGTCAGTGAAGCAACAGAAACGCAGAAGAAGTATGCTTTGACTGTTGC CCTTGCAACAGCTGCTGCAGCTGAGGCTGCTGTTGCTGCAGCTCATGCTGCAGCTGAGGTTGTCCGGCTCACAGGTGCTTCACAGTCTTCCCATCATTTC ACCAAGGGAGTTGAAACTTTGGCTGCCATTAAGATACAAAGCGCTTTCCGTGCATACCTTGCAAGGAAAGCTTTGCGAGCACTGAAGGGATTGGTAAAGC TTCAAGCCATTGTTCGTGGACGAGCTGTGAGACGCCAAGCAGTCATCAAATTGAAGCATCTGCCATCAAAAGCAAAGATGCTGTCAGAGGTCCAGTCAAA AGATATTGCCACTGCAGATGGATTTTGTAGAAACAGTGACAATAAACAGGTTGTCAAGTCAAAGAAAGAGGTGCGAGAGAAGGAAAATAAGGGGAAGAAC CATAAAAAAGATGCTCAACCAGAACACATGCTTGAATTCAACAGCCAAAGAAGTTGGGATTATAGTATGCTTTCAAAGGAAGATGTGGAAGCTCTGTGGT TAAAAAAGCAAGAAGCTAACATCAAAAGAGAGCGAATGATGAAATACTCATTCTCCCACCGGGAGAGAGGGAATAGTCTACTGGAAGAATTGCTACTCGC CAAGGAAAGTGGTAGACAGAGTCATCAGATGGAACGATGGTCAAACAAAGAGGCCTTTAATAGAGAAAAGATGGAGAATTTGAAATCAACGTCCATCTCT AATCTGTTTACTGGTGATGTATTCAGCCCAGCACAAGTTAAGACCAGAAGTACTCAAAAACAAGATTTCATAGAAGGATTGAACACACCAATGTCTGTCC CTAGAAGATCATTTGGCCGAGCACAACCAATTTTGGCAGGAGATGGTAATTCGTTGCCAAATTCTCCAGTTTTTCCAACTTACATGGCTGCAACACAATC TGCAAAGTTAAAGGCAAGGTCGATGAGCACACCAAAGCAACGTGTAGGATTTCAAGATTCTTGCTTTGACCAGAACTTGCCATATAAGAATGCACTCTCT CTTTGGTCTACGTATAATGGTGATCCGTTTGGCATTAGGAGAAAGAGCACTGGTGCTTCCCAGAATCTCTCTTTAAGCATAAACGGACATTACTGA
AA sequence Show only first row Show all	>Potri.006G046000.1 pacid=42769918 polypeptide=Potri.006G046000.1.p locus=Potri.006G046000 ID=Potri.006G046000.1.v4.1 annot-version=v4.1 MAKKRCWFGWVRRLFVSEQKTKAEKKSKRWKWVLGGLKVKQCPALPAPERSVSEATETQKKYALTVALATAAAAEAAVAAAHAAAEVVRLTGASQSSHHF TKGVETLAAIKIQSAFRAYLARKALRALKGLVKLQAIVRGRAVRRQAVIKLKHLPSKAKMLSEVQSKDIATADGFCRNSDNKQVVKSKKEVREKENKGKN HKKDAQPEHMLEFNSQRSWDYSMLSKEDVEALWLKKQEANIKRERMMKYSFSHRERGNSLLEELLLAKESGRQSHQMERWSNKEAFNREKMENLKSTSIS NLFTGDVFSPAQVKTRSTQKQDFIEGLNTPMSVPRRSFGRAQPILAGDGNSLPNSPVFPTYMAATQSAKLKARSMSTPKQRVGFQDSCFDQNLPYKNALS LWSTYNGDPFGIRRKSTGASQNLSLSINGHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03960		IQD12	IQ-domain 12 (.1)		Potri.006G046000 [exp]	0	1
AT3G11210			SGNH hydrolase-type esterase s...		Potri.010G189300 [exp]	3.46	0.6900
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.002G048300 [exp]	4.12	0.7168
AT3G11690			unknown protein		Potri.016G066300 [exp]	5.29	0.6774
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Potri.010G107900 [exp]	7.07	0.7022	Pt-CABP1.2
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.018G060300 [exp]	15.09	0.6486
AT2G37440			DNAse I-like superfamily prote...		Potri.017G074200 [exp]	18.76	0.6212
AT5G12000			Protein kinase protein with ad...		Potri.018G146966 [exp]	22.22	0.6140
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	28.93	0.6281
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.008G017800 [exp]	33.76	0.5427
AT2G42490			Copper amine oxidase family pr...		Potri.010G045600 [exp]	34.32	0.6022

Compare expression of checked genes

Potri.006G046000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.