Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 370 / 3e-128 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 363 / 2e-125 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 354 / 7e-122 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G16260 315 / 2e-106 Glycosyl hydrolase superfamily protein (.1) AT5G56590 261 / 3e-83 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 228 / 7e-71 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 225 / 2e-69 O-Glycosyl hydrolases family 17 protein (.1) AT1G77780 221 / 2e-69 Glycosyl hydrolase superfamily protein (.1) AT5G20340 219 / 7e-69 BG5 beta-1,3-glucanase 5 (.1) AT2G01630 218 / 1e-67 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048100 [exp] 413 / 5e-145 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 409 / 1e-143 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 407 / 9e-143 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.001G255100 [exp] 347 / 5e-119 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 338 / 3e-115 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 330 / 1e-112 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 297 / 1e-99 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 252 / 1e-81 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.009G050401 [exp] 248 / 5e-81 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002807 [exp] 389 / 2e-135 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10019801 [exp] 371 / 2e-128 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 365 / 5e-126 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10014109 [exp] 364 / 8e-126 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 358 / 4e-120 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 346 / 4e-119 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 309 / 6e-104 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 292 / 1e-97 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10010091 [exp] 272 / 1e-85 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10035423 [exp] 258 / 5e-84 AT3G57270 266 / 3e-87 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.006G046100.1 pacid=42767866 polypeptide=Potri.006G046100.1.p locus=Potri.006G046100 ID=Potri.006G046100.1.v4.1 annot-version=v4.1 ATGGCTAAATCCTCTGCGTCTCATAAAACGTCTCCCATGATTTCCGTAGTTCTGCTTGCAGGGCTGTTAATGAGTTGCCTACGCATAACAGGTGCTCAAA TGGGAGTTTGTTATGGAACACTTGGTGATAATTTACCATCGGAGCAAGAAGTTGTAGATCTTTTCAACCAATACAATATACGAAGAATGAGAATCTATGA TCCAAACCCAAGAACTCTCCAAGCTCTTGGAGGCTCCAGCATCGAGCTCATGTTGGGTGTTCCGAATTCTGACCTTCCAAGCATTTCTTCCAGTCAAGCC AATGCAGATGCATGGGTGCAAAACAATGTGCTCAAATACAGTAATGTCAAATTCAGATACATTGCGGTTGGAAATGAAGTGAAACCGGGTGACGATTTTG CTCCAGCTCTTTTCCCTGCCATGCAAAACATTCAGAACTCAATTTCTGCTGCTGGTCTAGGGAATCAAATCAAAGTCTCCACTGTTACCTTTGCTGCCGC ACTTGGCGAGTCCTACCCTCCATCACGAGGCGTTTTCAATGCAGAATACCACTCACTTCTTGCGCCTATTATTAGCTTCTTGGTCAGCAACCAGTCACCA TTTCTCGTGAACTTGTACCCTTACTTCAGTCGCGCAGAAAACAATGACATTCCTCTTAATTATGCACTTTTAGTACCTGATCCATCTGCCACAGTATCCG ATCCACCATTTGAATACAACAACCTTTTTGCTGCTATGGTGGATGCTGTTTACTCTGCACTTGAGAAGGCTGGTGGGGGTTCATTAGAGATCGTCGTATC GGAGAGTGGTTGGCCCTCGGCAGGAGGGGGACCAGAAACCAACATTGATAATGCAAGAACTTACAACACAAACTTGGTTCAGCAAGTGAAGAATGGCACT CCAAAGAGACCCGGAAGGCCTATCGAAACTTACATCTTCGCAACTTTCGACGAGAATCAGAAACAACCGGAATACGAGAAATTCTGGGGGCTCTTTCTTC CAAGTAAACAGCCCAAGTACCAAATTCAACTTGACTAG
AA sequence Show only first row Show all	>Potri.006G046100.1 pacid=42767866 polypeptide=Potri.006G046100.1.p locus=Potri.006G046100 ID=Potri.006G046100.1.v4.1 annot-version=v4.1 MAKSSASHKTSPMISVVLLAGLLMSCLRITGAQMGVCYGTLGDNLPSEQEVVDLFNQYNIRRMRIYDPNPRTLQALGGSSIELMLGVPNSDLPSISSSQA NADAWVQNNVLKYSNVKFRYIAVGNEVKPGDDFAPALFPAMQNIQNSISAAGLGNQIKVSTVTFAAALGESYPPSRGVFNAEYHSLLAPIISFLVSNQSP FLVNLYPYFSRAENNDIPLNYALLVPDPSATVSDPPFEYNNLFAAMVDAVYSALEKAGGGSLEIVVSESGWPSAGGGPETNIDNARTYNTNLVQQVKNGT PKRPGRPIETYIFATFDENQKQPEYEKFWGLFLPSKQPKYQIQLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Potri.006G046100 [exp]	0	1
AT1G59970			Matrixin family protein (.1)		Potri.008G027700 [exp]	2.00	0.9982	Pt-MMP.9
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004216 [exp]	2.00	0.9979
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003601 [exp]	3.74	0.9974
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004400 [exp]	5.47	0.9966
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003550 [exp]	6.00	0.9955
AT1G59970			Matrixin family protein (.1)		Potri.008G027975 [exp]	6.92	0.9974
AT1G16260			Wall-associated kinase family ...		Potri.001G039200 [exp]	8.71	0.9939
AT1G16260			Wall-associated kinase family ...		Potri.001G038525 [exp]	8.94	0.9938
AT1G16260			Wall-associated kinase family ...		Potri.001G038300 [exp]	9.79	0.9929
AT1G21550			Calcium-binding EF-hand family...		Potri.002G077300 [exp]	10.39	0.9940

Compare expression of checked genes

Potri.006G046100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.