Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41350 483 / 4e-174 AtAUG1, EMB2819 EMBRYO DEFECTIVE 2819, augmin 1, unknown protein AT2G21980 94 / 1e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043401 [exp] 447 / 7e-160 AT2G41350 404 / 7e-143 EMBRYO DEFECTIVE 2819, augmin 1, unknown protein Lus10034184 [exp] 436 / 4e-153 AT2G41350 396 / 2e-137 EMBRYO DEFECTIVE 2819, augmin 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G046200.2 pacid=42768106 polypeptide=Potri.006G046200.2.p locus=Potri.006G046200 ID=Potri.006G046200.2.v4.1 annot-version=v4.1 ATGAGTGATTTAATTTCTGGAGTTGATAATATGTCGGTGACGGAGGCGAAGAGTGGTGGTAATGATGCTGGTAGAATTGCAGAAGTGAAGGCGTGGCTTA CCTCACAATTTGATGCAGCGGGGAAAGATGTTCCTGAATTCGAATATACGCCACGCAGCATTGCTCATTTATATAATTTAGCTACTGCTTCACAAGCGAA AACACAGGCTGCCAACATTGTTGCGAATGATTTTCGCCAGAAAGCTGTGGAGTATCGTGCACAAGCTGCAAGGATTAGAGAGATACTCGAGAATGTGGGA TTAGCACAGGAGAGTTTGCCCTCGAATGTGGTTTCATCAGCTCAAGTTCTTGCAAATGTAGCAAACTTTTTGAATATAAGAGACACGGAACTAAGCAGTT TTCTTGTAGCAATGGGGGATCTTTCTTTAAGAAAGACTGGAGTAGAAGAGAAGAGAGCTAAAGTACAGAAGGAGTCCAAAATTCTCCTTGATTACACACG GAAGGCAATAGCCAGGCTTACCTATTTAAAAAGAACACTCGCACAACTAGAGGATGATGTACCTCCTTGCGAGGCTCAGATGGAGAATTGGAAGACAAAT TTAGCAGTTATGGCATCAAAGGAGCGACAATATTTGCAGCAGTACTCTAACTACAAGGCACTTCTTAATCGTGTGGGCTACACCCAAGACATTAGCCATG GGATGCTGGTAGAAATGGCTGAGCACAGACAAGATTTGGAGAAGAAAACAAAACCCATCATGGATACTTTGAGGAGTTACCAGGACTTGCCTCCGGATAA AGCCTTGGCTACTTTAGCCATTGAGGACAAGAAAAGGCAGTATGCTGCTGCCGAGAAGTATCTCGAAGATGTATTGCAATCAGCCCTTGCCACAACAGAT TAA
AA sequence Show only first row Show all	>Potri.006G046200.2 pacid=42768106 polypeptide=Potri.006G046200.2.p locus=Potri.006G046200 ID=Potri.006G046200.2.v4.1 annot-version=v4.1 MSDLISGVDNMSVTEAKSGGNDAGRIAEVKAWLTSQFDAAGKDVPEFEYTPRSIAHLYNLATASQAKTQAANIVANDFRQKAVEYRAQAARIREILENVG LAQESLPSNVVSSAQVLANVANFLNIRDTELSSFLVAMGDLSLRKTGVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLAQLEDDVPPCEAQMENWKTN LAVMASKERQYLQQYSNYKALLNRVGYTQDISHGMLVEMAEHRQDLEKKTKPIMDTLRSYQDLPPDKALATLAIEDKKRQYAAAEKYLEDVLQSALATTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Potri.006G046200 [exp]	0	1
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Potri.001G222200 [exp]	13.19	0.8968	Pt-ACCAL.3
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	14.79	0.8983	Pt-NPSN11.1
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028200 [exp]	18.65	0.8778	Pt-ADF1.1
AT2G42310			unknown protein		Potri.016G051400 [exp]	25.78	0.8860
AT2G35120			Single hybrid motif superfamil...		Potri.015G122500 [exp]	26.73	0.8870
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	28.14	0.8894	UXS1.1
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Potri.004G226400 [exp]	33.19	0.8650
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	38.05	0.8815
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.008G105300 [exp]	38.85	0.8807	ACLB.2
AT3G12110		ACT11	actin-11 (.1)		Potri.008G055500 [exp]	39.49	0.8862	ACT4,Pt-PEAC14.2

Compare expression of checked genes

Potri.006G046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.